Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n12
         (769 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051525-1|AAK92949.1|  434|Drosophila melanogaster GH18014p pro...    38   0.015
AE013599-442|AAM71096.2|  434|Drosophila melanogaster CG1600-PC,...    38   0.015
M80464-1|AAA28486.1| 1231|Drosophila melanogaster protein-tyrosi...    29   5.3  

>AY051525-1|AAK92949.1|  434|Drosophila melanogaster GH18014p
           protein.
          Length = 434

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 559 NNVASGMTAYT-AELDKRTLKLTQLTPPVKPDHHRAPSTASSH 434
           +N+ S M+  T   L   +L LT + PP  PDHH   ST S+H
Sbjct: 10  HNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHSTH 52


>AE013599-442|AAM71096.2|  434|Drosophila melanogaster CG1600-PC,
           isoform C protein.
          Length = 434

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 559 NNVASGMTAYT-AELDKRTLKLTQLTPPVKPDHHRAPSTASSH 434
           +N+ S M+  T   L   +L LT + PP  PDHH   ST S+H
Sbjct: 10  HNLLSSMSGTTDTSLSLNSLSLTSVLPPTDPDHHNPHSTHSTH 52


>M80464-1|AAA28486.1| 1231|Drosophila melanogaster protein-tyrosine
            phosphatase protein.
          Length = 1231

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 556  NVASGMTAYTAELDKRTLKLTQLTPPVKPDHHRAPSTASSHT 431
            N AS +T  TA         T +TP V P     PS AS H+
Sbjct: 1095 NAASPVTPATASASAGATPTTPMTPTVPPTIPTIPSLASQHS 1136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,536,414
Number of Sequences: 53049
Number of extensions: 843674
Number of successful extensions: 2240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)