Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16n12
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 33 0.22
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 31 1.2
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 31 1.2
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 30 2.1
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 30 2.1
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 30 2.1
Z75529-7|CAE54888.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75529-6|CAA99785.1| 269|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z93381-4|CAB07607.2| 382|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81500-5|CAB04102.1| 244|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = -3
Query: 731 CYLTNGDNRLYRCISQKCQVHHLRYCYRISRFDGHHSDDTVPAGIFPIIIRASFSCLE 558
C+ N +N Y C+ K + H+ YC ++ F + +T P + + LE
Sbjct: 603 CFCQNCNNNTYWCLRTKNETHNFLYCEFVTEFISFYDFNTDPDQLINAVYSLDIGVLE 660
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 464 SPGPL-YSLQSYP*CFSGASYKHNPRLCIYVPI 369
SPGP Y++ + P +SG SY +P++ +Y P+
Sbjct: 167 SPGPFSYAIPASPSPYSGYSYPASPQMFVYPPL 199
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 464 SPGPL-YSLQSYP*CFSGASYKHNPRLCIYVPI 369
SPGP Y++ + P +SG SY +P++ +Y P+
Sbjct: 168 SPGPFSYAIPASPSPYSGYSYPASPQMFVYPPL 200
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 553 VASGMTAYTAELDKRTLKLTQLTPPVKPDHHRAPSTASSHTP 428
VA+ + + ++ KL QL PP P APS++S+ P
Sbjct: 584 VANALAEKNKQQQQQQQKLNQLQPPHNPSLSTAPSSSSAQPP 625
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 553 VASGMTAYTAELDKRTLKLTQLTPPVKPDHHRAPSTASSHTP 428
VA+ + + ++ KL QL PP P APS++S+ P
Sbjct: 566 VANALAEKNKQQQQQQQKLNQLQPPHNPSLSTAPSSSSAQPP 607
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 553 VASGMTAYTAELDKRTLKLTQLTPPVKPDHHRAPSTASSHTP 428
VA+ + + ++ KL QL PP P APS++S+ P
Sbjct: 566 VANALAEKNKQQQQQQQKLNQLQPPHNPSLSTAPSSSSAQPP 607
>Z75529-7|CAE54888.1| 382|Caenorhabditis elegans Hypothetical
protein C44H9.7b protein.
Length = 382
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 331 FLANNSDGTVIAKLVEVIRKPRPLTTVLNKNLSELINYVKANP 203
F+ NNS G+ L + R +TT LN E+ N KANP
Sbjct: 129 FITNNSSGSH-ELLEHCPNRSRTITTCLNNFQDEVTNMKKANP 170
>Z75529-6|CAA99785.1| 269|Caenorhabditis elegans Hypothetical
protein C44H9.7a protein.
Length = 269
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 331 FLANNSDGTVIAKLVEVIRKPRPLTTVLNKNLSELINYVKANP 203
F+ NNS G+ L + R +TT LN E+ N KANP
Sbjct: 129 FITNNSSGSH-ELLEHCPNRSRTITTCLNNFQDEVTNMKKANP 170
>Z93381-4|CAB07607.2| 382|Caenorhabditis elegans Hypothetical
protein F28G4.4 protein.
Length = 382
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 198 IFGFALT*LISSDRFLLRTVVRGRGFRITSTSLAITVPSE 317
IFGFAL + S+ F+ + V R + F T SL+ +P E
Sbjct: 17 IFGFALLVVRYSEVFIDKRVFRQKNFLETLNSLSDQIPFE 56
>Z81500-5|CAB04102.1| 244|Caenorhabditis elegans Hypothetical
protein F11D11.7 protein.
Length = 244
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 364 PQIGTYMHNRGLCLYEAPLKHQGY 435
P++ +Y + G CLY A +H GY
Sbjct: 216 PELVSYETSAGDCLYTAAFRHSGY 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,299
Number of Sequences: 27780
Number of extensions: 416264
Number of successful extensions: 1235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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