Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n12
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 247 NKNLSELINYVKANPKILAIYSTSSPQDKLNIL 149
           N+++ + +NY+K   K L   S  S    +NIL
Sbjct: 312 NQDIEKFLNYLKRGGKTLTSISVESNTMFINIL 344


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 339 FPLGQQVNTPNW 374
           +P G + NTP W
Sbjct: 31  YPFGAEANTPGW 42


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 409 EAPLKHQGYDW 441
           E PL H  YDW
Sbjct: 254 EVPLSHPTYDW 264


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 466 HHRAPSTASSHTPDASVGLHINITP 392
           H  +PS  S H+ D    L++  +P
Sbjct: 121 HDNSPSFLSDHSRDQEQNLYLTPSP 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,622
Number of Sequences: 438
Number of extensions: 5155
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)