Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n11
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    33   0.095
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    30   0.50 
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   2.7  
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     27   4.7  
04_04_1696 + 35448667-35449641,35449726-35450562,35450667-354510...    27   6.2  
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709...    27   6.2  

>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 32.7 bits (71), Expect = 0.095
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +2

Query: 74  MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 211
           +  L+NL+   L  N L S+L+ +L KLH+ +  KL++ S + T +
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 906


>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 30.3 bits (65), Expect = 0.50
 Identities = 24/85 (28%), Positives = 44/85 (51%)
 Frame = -1

Query: 318 GDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTL 139
           G+ + T L  SN      ++++ A++NH     YAIT    LL +    + ++ +  N  
Sbjct: 282 GNGEDTNL--SNTKCTVEVSSISADKNHMPDVSYAITHY-RLLVEQLERVDLSMSETNIK 338

Query: 138 INFEINVFGKSLLLSKFVNFCIANS 64
           + F INV+  SL++  ++ + I NS
Sbjct: 339 LAFWINVY-NSLVMHAYLAYGIPNS 362


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 240 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 127
           N   FY YA  +  T   K  + + VAC L+N ++  +
Sbjct: 82  NFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQ 119


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/53 (20%), Positives = 29/53 (54%)
 Frame = -1

Query: 198 TLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIANSXRG*RFNI 40
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C A       F I
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKAKKKPARMFGI 214


>04_04_1696 + 35448667-35449641,35449726-35450562,35450667-35451001,
            35451371-35451497,35451594-35451752,35451872-35453053,
            35453164-35453424,35453513-35453761
          Length = 1374

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/49 (28%), Positives = 30/49 (61%)
 Frame = -1

Query: 156  NLINTLINFEINVFGKSLLLSKFVNFCIANSXRG*RFNIKC*PXVLSFL 10
            +L+++L++ E++V GKS L  K+   C+ ++ +      KC P  L+++
Sbjct: 1086 SLLSSLLHPEVSVNGKSSLKGKYSVICV-HANQFYTLRKKCCPSELAYI 1133


>01_05_0154 +
           18667338-18670110,18670233-18670561,18670914-18670939,
           18671678-18671783
          Length = 1077

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 56  PRSLLAMQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNVM 214
           P+SL +M++LTNL    L  N L+  + +V+  L  ++   L L  N L+  +
Sbjct: 463 PKSLGSMERLTNL---DLSSNRLVESIPDVIFSL-PSLTDSLLLSDNYLSGAL 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,255,665
Number of Sequences: 37544
Number of extensions: 107147
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)