Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n08
         (694 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1561|AAF54843.3|  435|Drosophila melanogaster CG11608-P...    31   1.1  
BT023197-1|AAY55613.1|  592|Drosophila melanogaster IP03156p pro...    29   6.0  
AE014297-2276|AAF55366.1|  553|Drosophila melanogaster CG8953-PA...    29   6.0  

>AE014297-1561|AAF54843.3|  435|Drosophila melanogaster CG11608-PA
           protein.
          Length = 435

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
 Frame = -1

Query: 241 LNQVLPILLKIIFALLGPSSA-----NIMLFHSNSVPKHLYCAPL----LD*ISSHDYAV 89
           L Q+LPILL I F  L  S+A      I+  +   +PK  +   L    +D ISSH+Y V
Sbjct: 5   LIQMLPILLGIFFVWLSNSTALSEVGAIVEENVRILPKGRFIGELEESLVDIISSHNYPV 64

Query: 88  VSHTSPTIKG 59
            +HT  T  G
Sbjct: 65  QTHTVVTRDG 74


>BT023197-1|AAY55613.1|  592|Drosophila melanogaster IP03156p
           protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = +3

Query: 207 IIFKRIGRTWFKVSRQSGNHPKSKKRRALLDVTPRLTRQLFDFKGSQLTMALWAI*EKEH 386
           I+F R  R  F  S++SGN  +S K   LL    R TR +      +L+M L  +  +E 
Sbjct: 48  ILFTRSLRETFAESQESGNQEQSSKALVLL----RCTRYI-----KRLSMVLTLLETEEG 98

Query: 387 M*RIHLKSLQNSLHTIIF 440
           + +++    Q  + TI+F
Sbjct: 99  LNKVNKTLFQLDVDTILF 116


>AE014297-2276|AAF55366.1|  553|Drosophila melanogaster CG8953-PA
           protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = +3

Query: 207 IIFKRIGRTWFKVSRQSGNHPKSKKRRALLDVTPRLTRQLFDFKGSQLTMALWAI*EKEH 386
           I+F R  R  F  S++SGN  +S K   LL    R TR +      +L+M L  +  +E 
Sbjct: 9   ILFTRSLRETFAESQESGNQEQSSKALVLL----RCTRYI-----KRLSMVLTLLETEEG 59

Query: 387 M*RIHLKSLQNSLHTIIF 440
           + +++    Q  + TI+F
Sbjct: 60  LNKVNKTLFQLDVDTILF 77


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,143,762
Number of Sequences: 53049
Number of extensions: 557258
Number of successful extensions: 1014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)