Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n08
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82285-2|CAD56248.1|  622|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z82285-1|CAB05302.1|  634|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z82285-2|CAD56248.1|  622|Caenorhabditis elegans Hypothetical
           protein T28F3.1b protein.
          Length = 622

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 105 EEIQSKSGAQYKCFGTELLWNS 170
           E+ ++K G +YKC GT  +WNS
Sbjct: 286 EKKKAKKGDKYKCSGTLKIWNS 307


>Z82285-1|CAB05302.1|  634|Caenorhabditis elegans Hypothetical
           protein T28F3.1a protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 105 EEIQSKSGAQYKCFGTELLWNS 170
           E+ ++K G +YKC GT  +WNS
Sbjct: 298 EKKKAKKGDKYKCSGTLKIWNS 319


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +2

Query: 17  LRMYYFYIFRVHFQTFNCGTSVGNNSIIVGGNSI----QKWCTVQMLRY*ITMEQHYV 178
           L +YY  +FR H  +F     + +  I++   +I     ++C ++   Y I +  HYV
Sbjct: 605 LTVYYSILFRKHTTSFLKNKIIFSTRIVISSPTIYFFFSEFCLLKRTDYRIPLNLHYV 662


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,310
Number of Sequences: 27780
Number of extensions: 314826
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)