Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16n08
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   6.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   6.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.4  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 346 NSQWHYGQYKKKSICKGYI*N 408
           N +++Y  Y KK   K YI N
Sbjct: 328 NYKYNYNNYNKKLYYKNYIIN 348


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 160 SNSVP--KHLYCAPLLD*ISSHDYAVVSHT 77
           +NS P  K LY  PLL   + H   VVS T
Sbjct: 215 TNSTPLLKKLYGGPLLRIFTKHMLDVVSGT 244


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 160 SNSVP--KHLYCAPLLD*ISSHDYAVVSHT 77
           +NS P  K LY  PLL   + H   VVS T
Sbjct: 230 TNSTPLLKKLYGGPLLRIFTKHMLDVVSGT 259


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 464 DVLTTERDKNDRV 426
           D+LTTE+D N+ V
Sbjct: 409 DLLTTEKDNNEIV 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,440
Number of Sequences: 438
Number of extensions: 3776
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)