Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16n04
(878 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY075226-1|AAL68093.1| 495|Drosophila melanogaster AT17674p pro... 33 0.52
AE014134-1754|AAF52849.2| 1317|Drosophila melanogaster CG13131-P... 33 0.52
AY069831-1|AAL39976.1| 485|Drosophila melanogaster SD07771p pro... 30 4.8
AL138972-12|CAB72295.1| 721|Drosophila melanogaster EG:BACR7C10... 30 4.8
AE014298-419|ABC67171.1| 485|Drosophila melanogaster CG9900-PC,... 30 4.8
AE014298-418|AAF45794.1| 721|Drosophila melanogaster CG9900-PB,... 30 4.8
X64390-1|CAB76122.1| 721|Drosophila melanogaster zw10 protein p... 29 6.4
AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein ... 29 6.4
AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB... 29 6.4
BT021418-1|AAX33566.1| 901|Drosophila melanogaster LD04461p pro... 29 8.5
AE014298-1652|AAF48069.1| 901|Drosophila melanogaster CG1703-PA... 29 8.5
>AY075226-1|AAL68093.1| 495|Drosophila melanogaster AT17674p
protein.
Length = 495
Score = 33.1 bits (72), Expect = 0.52
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -3
Query: 237 RPSIVKMLSREFDTEALVNFENDNCNVRIA-KTFGASKRKNTT-RSDDYESNKQPDYDMD 64
+P++ + +RE EAL +FE + I K F + + K++ DD + + D +
Sbjct: 401 KPAVTQQNNRENKPEALEDFERSSILTSIMDKVFSSQESKSSNGNCDDDKIPELEDINKP 460
Query: 63 LSDFSITEVEATSISNSVAD 4
++D + + E+ S+ ++V++
Sbjct: 461 INDMFVEDPESVSLKSNVSN 480
>AE014134-1754|AAF52849.2| 1317|Drosophila melanogaster CG13131-PA
protein.
Length = 1317
Score = 33.1 bits (72), Expect = 0.52
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -3
Query: 237 RPSIVKMLSREFDTEALVNFENDNCNVRIA-KTFGASKRKNTT-RSDDYESNKQPDYDMD 64
+P++ + +RE EAL +FE + I K F + + K++ DD + + D +
Sbjct: 401 KPAVTQQNNRENKPEALEDFERSSILTSIMDKVFSSQESKSSNGNCDDDKIPELEDINKP 460
Query: 63 LSDFSITEVEATSISNSVAD 4
++D + + E+ S+ ++V++
Sbjct: 461 INDMFVEDPESVSLKSNVSN 480
>AY069831-1|AAL39976.1| 485|Drosophila melanogaster SD07771p
protein.
Length = 485
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 660 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 484
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 483 AMLSTLEMTQPLLEI 439
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>AL138972-12|CAB72295.1| 721|Drosophila melanogaster
EG:BACR7C10.3,FBgn0004643;mit(1)15 protein.
Length = 721
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 660 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 484
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 483 AMLSTLEMTQPLLEI 439
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>AE014298-419|ABC67171.1| 485|Drosophila melanogaster CG9900-PC,
isoform C protein.
Length = 485
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 660 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 484
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 483 AMLSTLEMTQPLLEI 439
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>AE014298-418|AAF45794.1| 721|Drosophila melanogaster CG9900-PB,
isoform B protein.
Length = 721
Score = 29.9 bits (64), Expect = 4.8
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 660 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 484
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 483 AMLSTLEMTQPLLEI 439
S E L+++
Sbjct: 194 LQQSLQERFDRLVQL 208
>X64390-1|CAB76122.1| 721|Drosophila melanogaster zw10 protein
protein.
Length = 721
Score = 29.5 bits (63), Expect = 6.4
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 660 KCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNL-SSLESYETLKIKLALSKYM 484
K K V + V + + D+ + ++A +++ + +LE YET+K+K + YM
Sbjct: 134 KATKDYLVLLDLVGRLRAFIYGDDSVDGDAQVATPEVRRIFKALECYETIKVKYHVQAYM 193
Query: 483 AMLSTLEMTQPLLEI 439
S E L+++
Sbjct: 194 LQQSLQERFARLVQL 208
>AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein
protein.
Length = 1199
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 693 YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY--ELAEFDLKNLSSLESYE 520
Y H+ + + I+ R KV T+ N D ++ A D + L+ +E
Sbjct: 588 YRHSQEYQTLKDIIEQNRQTAEKV---TQRENQDRRVISVQMKRYASLDEQQLNQIEEKL 644
Query: 519 TLKIKLALSKYMA 481
T ++LAL+ YMA
Sbjct: 645 TEYLRLALTNYMA 657
>AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB
protein.
Length = 2767
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -3
Query: 693 YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY--ELAEFDLKNLSSLESYE 520
Y H+ + + I+ R KV T+ N D ++ A D + L+ +E
Sbjct: 2156 YRHSQEYQTLKDIIEQNRQTAEKV---TQRENQDRRVISVQMKRYASLDEQQLNQIEEKL 2212
Query: 519 TLKIKLALSKYMA 481
T ++LAL+ YMA
Sbjct: 2213 TEYLRLALTNYMA 2225
>BT021418-1|AAX33566.1| 901|Drosophila melanogaster LD04461p
protein.
Length = 901
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 126 RKNTTRSDDYESNKQPDYDMDLSDFSITEVEATSI 22
+KN ++DD+ +P+ D+D D EVE ++
Sbjct: 134 KKNKKKNDDFSDEDKPELDLDDLDNEEDEVEVVAV 168
>AE014298-1652|AAF48069.1| 901|Drosophila melanogaster CG1703-PA
protein.
Length = 901
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 126 RKNTTRSDDYESNKQPDYDMDLSDFSITEVEATSI 22
+KN ++DD+ +P+ D+D D EVE ++
Sbjct: 134 KKNKKKNDDFSDEDKPELDLDDLDNEEDEVEVVAV 168
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,060,168
Number of Sequences: 53049
Number of extensions: 682360
Number of successful extensions: 1595
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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