Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m24
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   103   1e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    96   2e-20
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   0.86 
03_05_0161 + 21400580-21401695                                         30   1.5  
05_07_0031 - 27183252-27183317,27183542-27184282                       27   8.0  
04_04_0387 + 24869594-24871480                                         27   8.0  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  103 bits (247), Expect = 1e-22
 Identities = 57/135 (42%), Positives = 77/135 (57%)
 Frame = -2

Query: 528 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 349
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 348 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 169
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 168 RARTAVFKSLKVKAA 124
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 50/117 (42%), Positives = 70/117 (59%)
 Frame = -2

Query: 525 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 346
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 345 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 175
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 44  GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 223
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 365 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 460
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>05_07_0031 - 27183252-27183317,27183542-27184282
          Length = 268

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 392 GTPLPGPSTSARVWSITSTTLTNFPFXGPSATRATRPGSTYRAKG 526
           G P P P T A     T   +   P  G +ATR  R  S++R  G
Sbjct: 24  GQPPPPPPTPAHRLPPTVLPVVALPAGGDAATRDRRRSSSHRRGG 68


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -2

Query: 282 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 103
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 102 K 100
           K
Sbjct: 557 K 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,936
Number of Sequences: 37544
Number of extensions: 320757
Number of successful extensions: 983
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)