Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m23
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    31   0.16 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.21 
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    28   1.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.5  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.5  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    27   3.4  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   7.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   7.8  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/111 (20%), Positives = 53/111 (47%)
 Frame = -1

Query: 346  LENNTVNNRIIDLNDVXXXXXXXXXXRAKNSQVEHKMTMLNCDYAMLKHEHKITELKLKW 167
            L ++T N++ +   D           + +NS+ E +  ++  + ++   E+ +T  +   
Sbjct: 816  LLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERA-- 873

Query: 166  ANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAEL 14
               D EE  ++TQE  + + D   + ++Q    Q + +  ++ N+EL +EL
Sbjct: 874  IALDKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESEL 924


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = -1

Query: 262 KNSQVEHKMTMLNCDYAMLKHEHKI---TELKLKWANRDLEEFTKKTQELQSTVNDLQEQ 92
           K++ ++ K   LN     +K + K+   T+  L+   RD+    KK +  +S +N+L+ +
Sbjct: 481 KSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGE 540

Query: 91  LRKQVAESQAKFSQFERRNSE 29
           L+ +++ S+   SQ     +E
Sbjct: 541 LQTEISNSEHLSSQLSTLAAE 561



 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -1

Query: 181 LKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRN 35
           LKL+ +N+ L +  +    L+  +  L+E LRK  +E   +FS+ E +N
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRK--SEEALRFSKLEAKN 714


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -1

Query: 172 KWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAE 17
           ++A++  EEF K   +     +  + + +KQV ++ A      ++NS+ V +
Sbjct: 47  EYASKKEEEFKKSESQASGIYSQAEAESKKQVQDTFASIETSSQKNSDKVVD 98


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
 Frame = -1

Query: 382  NRDSIKQ--HWRELLENNTVNNRIIDLNDVXXXXXXXXXXRAKNSQVEHKMTMLNCDYAM 209
            N + I+Q  + R L+    + N +  L  +             + Q+E     L      
Sbjct: 656  NTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQL--TS 713

Query: 208  LKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSE 29
            L  E  +   KL    + L    +   EL  +   LQEQL  +  E Q   SQ    NS+
Sbjct: 714  LTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQ 773

Query: 28   L 26
            L
Sbjct: 774  L 774



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 208  LKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRK 83
            L+HE +I + K +    D     ++ + LQSTV+ LQ +L +
Sbjct: 1206 LRHEKEIMDNKYELTILDNRGLNQQVKSLQSTVDSLQLELNR 1247


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -1

Query: 175 LKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAE 17
           LK   +DLE    K +E + ++N+   +L +       +F +FE R    + +
Sbjct: 233 LKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQ 285


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -1

Query: 217 YAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAK 59
           Y++ K   + +  +L   +R   E  +  +ELQ  +N+L++  RK   +SQAK
Sbjct: 61  YSLGKRISQPSYARLVGPSRPTLENLQDRRELQEQLNELRKLSRKSAFKSQAK 113


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 24/120 (20%), Positives = 44/120 (36%)
 Frame = -1

Query: 385 RNRDSIKQHWRELLENNTVNNRIIDLNDVXXXXXXXXXXRAKNSQVEHKMTMLNCDYAML 206
           +N DS+ Q   EL  N     +++               R     +EH+  M   +   L
Sbjct: 51  KNMDSVVQKLNELQNNVVAFQKLLQEKTPLSSIQDLEGFREFMENLEHRYEMTVSEVRRL 110

Query: 205 KHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 26
            HE    +   +      E+  +K     S  N L  Q + ++ +S  + S+ E + + L
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSL 170


>SPAC644.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 163 NRDLEEFTKKTQELQSTVNDLQEQLRKQVAE 71
           N  LE+F K ++E   TV  +   LR+Q  E
Sbjct: 48  NNSLEDFRKYSKEFLETVEFISTGLRRQALE 78


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 196 HKITELKLKWANRDLEEFTKKTQ-ELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 26
           HKI E  L    R L E T+K Q EL   ++DL+E L      S+ +  +  R + ++
Sbjct: 121 HKILE-NLDEQTRKLSERTEKQQDELDIALDDLEETLNTLKRTSENRDREIARISQDV 177


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 245 FNLAVLGSQLGPFSFQSLHIV*VYNAIVD 331
           F LA     +G FSFQ++H+   YN + +
Sbjct: 44  FELATNRKVVGKFSFQNVHLENEYNILTE 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,305
Number of Sequences: 5004
Number of extensions: 52212
Number of successful extensions: 207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)