Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16m23
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 35 0.094
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 32 0.50
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 31 1.5
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 30 2.7
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 29 3.5
11_06_0007 - 19171122-19172036 29 6.2
08_02_0183 + 13936759-13936807,13936885-13936971,13937069-139372... 29 6.2
05_04_0300 - 19969066-19969535,19971216-19972686 29 6.2
01_06_0281 + 28155039-28155160,28155243-28155333,28155822-281558... 29 6.2
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 8.2
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 28 8.2
02_04_0073 - 19471254-19472681 28 8.2
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 34.7 bits (76), Expect = 0.094
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -1
Query: 265 AKNSQVEHKMTMLNCDYAMLKHEHKITELKLKWANRD--LEEFTKKTQELQSTVNDLQEQ 92
A N + K+ L D K EH++T+LK+K + + LEE KK EL + + Q+
Sbjct: 377 ATNGEEMSKLEALLLDKNR-KMEHELTQLKVKISEKSNLLEEAEKKIAELTAKAEEQQKL 435
Query: 91 LRKQVAESQAKFSQFERRNSEL 26
+ K + +S +RR S L
Sbjct: 436 ILKLEDDILKGYSSTDRRTSLL 457
>02_05_0232 +
27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 32.3 bits (70), Expect = 0.50
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 247 EHKMTMLNCDYAMLKHEHKITELK--LKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVA 74
EHK + + + L EH+ITE++ LK L E Q LQ+ LQ++ V+
Sbjct: 506 EHKDKLHDVEEQKLMVEHRITEIRSVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVS 565
Query: 73 ESQ 65
ESQ
Sbjct: 566 ESQ 568
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 208 LKHEHKIT--ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFS 53
L H ++IT +L+ NRD E+ + L++ ++ L+ LR+Q E + S
Sbjct: 67 LFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVS 120
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -1
Query: 136 KTQELQSTVNDLQEQ---LRKQVAESQAKFSQFERRNSELVA 20
+ Q+LQ TV L+++ +RK +AES + RRN +L++
Sbjct: 1609 RAQQLQDTVQKLRQESDAVRKALAESHGRNEDLIRRNDDLLS 1650
>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 205 KHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSE 29
K + + +KLK LE+ K QE +S EQ+ Q+ E +A+ ++ ++ E
Sbjct: 862 KRDMQAPIIKLKETRESLEKELKSLQERESEARAEAEQISNQMEELKAEAEDWKSKSDE 920
>11_06_0007 - 19171122-19172036
Length = 304
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 166 ANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAEL 14
A+R L+E + + DL+E+LR+ AESQA + R N + A L
Sbjct: 140 ASRRLQETESQLAAARRRAADLEERLRQAAAESQA-WCGLARSNEAVAAGL 189
>08_02_0183 +
13936759-13936807,13936885-13936971,13937069-13937202,
13937830-13938024,13939283-13939341,13939409-13939463,
13939577-13939624,13941215-13941248,13941425-13941478,
13942450-13942493,13942771-13942818,13942901-13943020,
13943132-13943212
Length = 335
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 154 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 26
+EE+ + L+S ++DL+E+ K+ AE Q + + + ++L
Sbjct: 1 MEEYLANMKTLRSYMSDLEEEATKRSAEEQRQRTAIDAHGADL 43
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 214 AMLKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAES 68
A L + +L + R +EE +K + + S +NDL ++ VAE+
Sbjct: 177 ARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSRISFVVAEN 225
>01_06_0281 +
28155039-28155160,28155243-28155333,28155822-28155878,
28156174-28156221,28156399-28156449,28156529-28156572,
28156673-28156736,28156927-28157013,28157304-28157395,
28157489-28157539,28158592-28158641,28158717-28158781,
28158876-28159019,28159156-28159197
Length = 335
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 583 TTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 488
T +K+ K+V ++ TS +H VCF+ + ++
Sbjct: 249 TIMKEYKSVQDAYKTSDKYSHTVCFRAFEHLL 280
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 187 TELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVA 20
TE+KL+ A +L + + QEL + +EQ A++ A + E EL A
Sbjct: 988 TEMKLQQAGENLTQKETECQELSEKLKAAEEQAASYQAKATAAAEEVESVKVELEA 1043
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -1
Query: 136 KTQELQSTVNDLQEQLRKQVAESQAKFSQFER 41
K EL++ V++L+EQL+K +E ++FE+
Sbjct: 462 KESELEAEVSNLKEQLKKTSSEKAEMTAKFEK 493
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 479 IVHNYPDITFETHSMVTIN 535
I+H Y D+ FE HS + +N
Sbjct: 272 IIHGYQDLLFEKHSWIALN 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,278,979
Number of Sequences: 37544
Number of extensions: 310331
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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