Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16m23
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical ... 35 0.064
AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical ... 33 0.34
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 31 1.4
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical pr... 30 2.4
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical... 29 3.2
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c... 29 3.2
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.2
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 29 4.2
U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defecti... 29 4.2
AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome at... 29 4.2
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 29 4.2
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 29 4.2
Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical pr... 29 5.5
AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical ... 28 7.3
AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical ... 28 7.3
AC024850-1|AAF60860.2| 404|Caenorhabditis elegans Groundhog (he... 28 7.3
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 28 9.6
>U41026-1|AAM51522.2| 101|Caenorhabditis elegans Hypothetical
protein C28G1.5 protein.
Length = 101
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -1
Query: 598 CNICFTTLKDTKNVDSSFVT-SIDCNHAVCFKCYVRIIMDNSTYKC-FC 458
C ICF DT DS + ++ C HA+C KC + +++NST +C FC
Sbjct: 6 CKICFDRFSDT---DSEHIPRNLTCGHALCHKC-ITAMVNNSTVECPFC 50
>AL032651-2|CAB60579.1| 272|Caenorhabditis elegans Hypothetical
protein Y6D1A.2 protein.
Length = 272
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 598 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 464
C IC +DTK +DC H +C +C RI +KC
Sbjct: 183 CEICSREYEDTKE---RVPRVLDCGHTICHECITRIHKPTEPFKC 224
>AF016677-4|AAL11109.2| 304|Caenorhabditis elegans Hypothetical
protein ZK1240.3 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -1
Query: 598 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKCFCSASSS--DFRVY 428
C IC K+ N+D + I C H++C C ++I ++ Y FC ++ D +V
Sbjct: 6 CEIC---CKEYSNIDQNHSPKILKCGHSICQICAAKLITNSCIYCPFCRETTKIRDGKVE 62
Query: 427 NKHGYVEFMPLTLIRNRDSIKQ 362
N M I + KQ
Sbjct: 63 NLKKNFGLMKAIEIMKNSTTKQ 84
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = -1
Query: 178 KLKWANRDLEEFTKKTQ-ELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAEL 14
KL+ R +EE KKT+ EL++ LR+Q AE+ +KF F++++ +A++
Sbjct: 586 KLQETRRRMEETLKKTEDELKNLKTQRLRLLREQRAEA-SKFQAFKQKHEREMAQM 640
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -1
Query: 193 KITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFER 41
K T ++K N+ L++ ++ ++ QS V + +LRK +AE+ K +F+R
Sbjct: 541 KKTIQEVKADNKKLQQILEEVRQNQSKVLEENVKLRKGMAEAIEKIEEFKR 591
>Z46242-7|CAA86336.1| 1549|Caenorhabditis elegans Hypothetical protein
F35G12.8 protein.
Length = 1549
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 223 CDYAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE 44
CD + +H+ I ++K K +L E +E++S + E+ KQ+ + Q K +
Sbjct: 950 CDENISRHDKDIEKMKKKC--EELMEKAIDDEEVKSK-KETVERFEKQIKKLQTKGEEMT 1006
Query: 43 RRNSELVA 20
++ SEL A
Sbjct: 1007 KKQSELSA 1014
>Z34801-3|CAA84327.1| 520|Caenorhabditis elegans Hypothetical
protein F59A2.2 protein.
Length = 520
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -1
Query: 193 KITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFE 44
K++E K + LEE +K E+++ +ND E+L+++ + + + S ++
Sbjct: 368 KLSEAKAQGVKAVLEEEERKRTEMETDLNDEIERLKEETEKMRLEMSTYK 417
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -1
Query: 151 EEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVAE 17
++ + + L+ TV+DL+ ++KQ +E QAK Q E+ ++
Sbjct: 951 KKIEQDNEGLKKTVSDLETTIKKQESEKQAKDHQIRSLQDEIQSQ 995
>AL023828-24|CAD56604.1| 196|Caenorhabditis elegans Hypothetical
protein Y17G7B.21 protein.
Length = 196
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -1
Query: 193 KITELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSELVA 20
K+ + K+A R + +L+ + ++ ++++AES+A+ +F+R EL+A
Sbjct: 72 KLFNVGKKYAKRFATSTSSAASKLRLVKLKIDKKYQQRLAESKARVERFQREREELLA 129
>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 1 protein.
Length = 1475
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = -1
Query: 265 AKNSQVEHKMTMLNCDYAMLKHEHKITELKLKWANRDLEEFTKKTQELQSTV---NDLQE 95
+++ + EH++ M K E ++ LK + AN +++EF K ++L+ V ++ +E
Sbjct: 397 SESLKYEHELVRKMMIEDMEKLEAEVLALKSQQANLEIQEFHDKIKQLELEVQLSSENKE 456
Query: 94 QLRKQVAESQAKFSQFERRNSELV 23
+L+ ++ Q K S+ + E V
Sbjct: 457 KLQAELMVVQEKASENIKNAEEKV 480
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1
Query: 154 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSE 29
LEE K+ E S++NDL+E+L AES+ K ++++ E
Sbjct: 436 LEEKNKEISERDSSINDLKEKL----AESEKKATKYKNELKE 473
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1
Query: 154 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSE 29
LEE K+ E S++NDL+E+L AES+ K ++++ E
Sbjct: 438 LEEKNKEISERDSSINDLKEKL----AESEKKATKYKNELKE 475
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 184 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 26
E KLK + L ++ K +ELQS +N +++L + AE++ + EL
Sbjct: 278 EKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNTHDFEL 330
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 184 ELKLKWANRDLEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSEL 26
E KLK + L ++ K +ELQS +N +++L + AE++ + EL
Sbjct: 278 EKKLKTSQEKLVKYEGKIEELQSRLNKKRKELEEVQAENRKLLEDKNTHDFEL 330
>U29380-18|ABB88224.1| 733|Caenorhabditis elegans Zygote defective:
embryonic lethalprotein 12, isoform d protein.
Length = 733
Score = 29.1 bits (62), Expect = 4.2
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Frame = -1
Query: 427 NKHGYVEFMPLTLIRNRDSIKQ---HWRELLEN-NTVNNRIIDLNDVXXXXXXXXXXRAK 260
+K VE + + LI++++ +K+ EL+E N + N++I V A
Sbjct: 434 SKKRCVEQLEIQLIQHKEKVKELEDRKDELIEERNRLENQLIFKEAVTPRSLHESMFEAG 493
Query: 259 NSQVEHKMTM-LNCDYAMLKHEHKITE---------LKLKWANRDLEE----FTKKTQEL 122
N + K T+ L + L + E + LK N LEE TK+ +EL
Sbjct: 494 NLSFDEKNTLPLEIENKRLTERIQELESLEPLKGELITLKSKNGVLEEEKLFATKQIEEL 553
Query: 121 QSTVNDLQEQLRK 83
Q + DLQE L K
Sbjct: 554 QQQIEDLQENLLK 566
>AY487140-1|AAR32790.1| 733|Caenorhabditis elegans centrosome
attachment protein A protein.
Length = 733
Score = 29.1 bits (62), Expect = 4.2
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 18/133 (13%)
Frame = -1
Query: 427 NKHGYVEFMPLTLIRNRDSIKQ---HWRELLEN-NTVNNRIIDLNDVXXXXXXXXXXRAK 260
+K VE + + LI++++ +K+ EL+E N + N++I V A
Sbjct: 434 SKKRCVEQLEIQLIQHKEKVKELEDRKDELIEERNRLENQLIFKEAVTPRSLHESMFEAG 493
Query: 259 NSQVEHKMTM-LNCDYAMLKHEHKITE---------LKLKWANRDLEE----FTKKTQEL 122
N + K T+ L + L + E + LK N LEE TK+ +EL
Sbjct: 494 NLSFDEKNTLPLEIENKRLTERIQELESLEPLKGELITLKSKNGVLEEEKLFATKQIEEL 553
Query: 121 QSTVNDLQEQLRK 83
Q + DLQE L K
Sbjct: 554 QQQIEDLQENLLK 566
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -1
Query: 154 LEEFTKKTQELQSTVNDLQEQLRKQVAESQAKFSQFERRNSE 29
LEE K+ E S++NDL+E+L AES+ K ++++ E
Sbjct: 438 LEEKNKEISERDSSINDLKEKL----AESEKKATKYKNELKE 475
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 598 CNICFTTLKDTKNVDSSFVTSI-DCNHAVCFKCYVRIIMDNSTYKC 464
C +C +D N+D S + C H++C C V++I NS C
Sbjct: 6 CEVCN---EDYSNLDESRAPRVLKCGHSICQNCAVKLI-SNSVILC 47
>Z99278-7|CAB16488.1| 382|Caenorhabditis elegans Hypothetical
protein Y53C12B.6 protein.
Length = 382
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 526 NHAVCFKCYVRIIMDNSTYKC---FCSASSSDFRVYNKHGYVEFMPLTLIRNR 377
NH V FKC +RI + N + +C CS + S + K V P L++ +
Sbjct: 258 NHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFEHPFLLLKQK 310
>AL132948-9|CAC51067.1| 256|Caenorhabditis elegans Hypothetical
protein Y39B6A.10 protein.
Length = 256
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -1
Query: 577 LKDTKNVDSSFVTSIDCNHAVCFKCYVRIIM-DNSTYKCFCSASSSDFRVYNKHGYVEFM 401
LK T+N++ S + + A+C K V + + D + ++ F S R+ K
Sbjct: 115 LKITENLEKSIIDYL----ALCQKLPVLVTLRDVTEFQIFAQKSEVPLRIQYKK-----R 165
Query: 400 PLTLIRNRDSIKQHWRELLENNTVNNRII 314
L ++R +++KQ + ++L N+T +I
Sbjct: 166 KLKILRISENLKQFFTKMLGNSTSGTHLI 194
>AF024499-3|AAB70357.1| 374|Caenorhabditis elegans Hypothetical
protein F42G2.5 protein.
Length = 374
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 598 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FC 458
C IC TL+ + VD+ + C H++C C + + N C FC
Sbjct: 134 CEIC--TLEFSSVVDNQIPRILQCGHSICQSCASK-LAKNCVILCPFC 178
>AC024850-1|AAF60860.2| 404|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 16 protein.
Length = 404
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 112 VNDLQEQLRKQVAESQAKFSQFERRNSELVAE 17
VN+ + QL KQ+ E Q KF + E+ + V E
Sbjct: 130 VNEYELQLAKQIEEDQLKFVEDEKNPMKYVVE 161
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = -1
Query: 601 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 488
SC IC+ K + F C H +C +C +++
Sbjct: 115 SCGICYDPFNTGKRIPKVF----PCGHTICLQCIKKLL 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,359,206
Number of Sequences: 27780
Number of extensions: 304863
Number of successful extensions: 1175
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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