Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m20
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.13 
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   1.5  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   2.0  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    24   4.7  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    23   8.3  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 289 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 191
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 280 PPPLRSLISNLSNTCDLTPLPEW 212
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 19  PRSTALPSAVVAAVMDPLD 75
           P+  AL  A+ AAV+ PLD
Sbjct: 171 PKGAALSGAITAAVLTPLD 189


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 177 PHAPHHALCSHDHSGSGVRSQVLERLEMRLRSGGGGA 287
           P+      CS+D+   G   ++ E +   + + GGGA
Sbjct: 172 PNTRVEVWCSNDYLNMGGHKKIREAMHQCIETYGGGA 208


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 4   FYILRPRSTALPSAVVAAVMDPLD 75
           FYI + +S+ LPS+ +A V    D
Sbjct: 804 FYISQQQSSVLPSSQIATVFSQED 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 854,804
Number of Sequences: 5004
Number of extensions: 9702
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)