Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m20
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0083 + 1187861-1188340                                           29   1.0  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   1.8  
01_06_0581 - 30386018-30386440                                         27   4.1  
03_06_0678 - 35480711-35484658                                         26   5.4  
01_01_0278 - 2281536-2281977,2282523-2282926                           26   5.4  
11_06_0407 + 23205895-23206255,23206482-23206690                       26   7.1  
02_05_0073 - 25602268-25603182,25603273-25604190                       26   7.1  
03_06_0673 - 35446537-35446629,35447001-35448548                       25   9.4  

>09_01_0083 + 1187861-1188340
          Length = 159

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 219 GSGVRSQVLERLEMRLRSGGGGARXVECSXA 311
           GSGV ++  ER   RLR G GGA  + C  A
Sbjct: 81  GSGVAAE--ERWRRRLRRGRGGAGRISCQDA 109


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 189  HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGAR 290
            H A C+ D  G GVR + +     RLR+G  G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 222 SGVRSQVLERLEMRLRSGGGGAR 290
           SG+  +V +R+E   R GGGG R
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRR 53


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 316 QRAXLHSTXRAPPPPLRSLISNLSNTCDLTPL 221
           +R+  +S    PPP L  ++ +++  C  +PL
Sbjct: 346 KRSAFNSEQERPPPELLEMVGDIAKKCSGSPL 377


>01_01_0278 - 2281536-2281977,2282523-2282926
          Length = 281

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -1

Query: 289 RAPPPPLRSLISNLSNTCDLT 227
           R P P   SLISN SNT  LT
Sbjct: 200 RPPSPSQSSLISNQSNTSTLT 220


>11_06_0407 + 23205895-23206255,23206482-23206690
          Length = 189

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 WSEVTSIREVGDEAPERRGWR 286
           WSEV SI     +A   RGW+
Sbjct: 10  WSEVASIAMANGDAVASRGWK 30


>02_05_0073 - 25602268-25603182,25603273-25604190
          Length = 610

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 186 PHHALCSHDHSGSGVRSQVLERLEMRLRSGGGGARXV 296
           P H++ S   S  G  + V+ R     RSGGGG   V
Sbjct: 560 PEHSVRSRAGSSGGNSNNVVHRGRGAHRSGGGGGGSV 596


>03_06_0673 - 35446537-35446629,35447001-35448548
          Length = 546

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 301 HSTXRAPPPPLRSLISNLSNTCDLTPLPE 215
           H+  +A PP L  LI + +   DL  LPE
Sbjct: 58  HNRGKASPPSLSELIGSRTFLHDLPELPE 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,934,986
Number of Sequences: 37544
Number of extensions: 119265
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)