Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m20
         (316 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB043635-1|BAA96236.2|  277|Homo sapiens 16-5-5 protein.               29   2.9  
AL163283-1|CAB90464.1|  169|Homo sapiens human CHD2-52 down synd...    29   3.8  
AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhe...    29   3.8  
AF023450-1|AAC17967.1| 1571|Homo sapiens Down syndrome cell adhe...    29   3.8  
AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhe...    29   3.8  
AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhe...    29   3.8  
BC021565-1|AAH21565.1|  465|Homo sapiens sorting nexin 8 protein.      28   5.0  
BC007785-1|AAH07785.2|  459|Homo sapiens SNX8 protein protein.         28   5.0  
AF121858-1|AAD27831.1|  465|Homo sapiens sorting nexin 8 protein.      28   5.0  
S75755-1|AAD14185.1|  189|Homo sapiens PSA protein.                    28   6.6  
AL450992-1|CAI12160.1|  249|Homo sapiens novel protein protein.        27   8.8  

>AB043635-1|BAA96236.2|  277|Homo sapiens 16-5-5 protein.
          Length = 277

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 259 ISNLSNTCDLTPLPEWSCEQSAW 191
           +  L ++C  TP+  W C Q+AW
Sbjct: 246 LQRLLSSCGPTPVTAWRCRQAAW 268


>AL163283-1|CAB90464.1|  169|Homo sapiens human CHD2-52 down
           syndrome cell adhesion molecule protein.
          Length = 169

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   IYYVPGARHFHPRSWLQLW 64
           IY VPG RH HP   LQ++
Sbjct: 66  IYDVPGIRHVHPNGTLQIF 84


>AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell
           adhesion molecule protein.
          Length = 2012

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   IYYVPGARHFHPRSWLQLW 64
           IY VPG RH HP   LQ++
Sbjct: 66  IYDVPGIRHVHPNGTLQIF 84


>AF023450-1|AAC17967.1| 1571|Homo sapiens Down syndrome cell
           adhesion molecule protein.
          Length = 1571

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   IYYVPGARHFHPRSWLQLW 64
           IY VPG RH HP   LQ++
Sbjct: 66  IYDVPGIRHVHPNGTLQIF 84


>AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell
           adhesion molecule protein.
          Length = 1896

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   IYYVPGARHFHPRSWLQLW 64
           IY VPG RH HP   LQ++
Sbjct: 52  IYDVPGIRHVHPNGTLQIF 70


>AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell
           adhesion molecule isoform CHD2-42 precursor variant
           protein.
          Length = 2023

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 8   IYYVPGARHFHPRSWLQLW 64
           IY VPG RH HP   LQ++
Sbjct: 77  IYDVPGIRHVHPNGTLQIF 95


>BC021565-1|AAH21565.1|  465|Homo sapiens sorting nexin 8 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 235 DLTPLPEWSCEQSAWWGACGRVL 167
           D TPLP W+   S+ WG+  + L
Sbjct: 266 DTTPLPSWAALNSSTWGSLKQAL 288


>BC007785-1|AAH07785.2|  459|Homo sapiens SNX8 protein protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 235 DLTPLPEWSCEQSAWWGACGRVL 167
           D TPLP W+   S+ WG+  + L
Sbjct: 260 DTTPLPSWAALNSSTWGSLKQAL 282


>AF121858-1|AAD27831.1|  465|Homo sapiens sorting nexin 8 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 235 DLTPLPEWSCEQSAWWGACGRVL 167
           D TPLP W+   S+ WG+  + L
Sbjct: 266 DTTPLPSWAALNSSTWGSLKQAL 288


>S75755-1|AAD14185.1|  189|Homo sapiens PSA protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 20  PGARHFHPRSWLQLWIP*IVEGSSRSW 100
           P A H HP S + +W+P +    S +W
Sbjct: 1   PQAYHLHPESCVTMWVPVVFLTLSVTW 27


>AL450992-1|CAI12160.1|  249|Homo sapiens novel protein protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 283 PPPPLRSLISNLSNTCDLTPLPEWSCEQS 197
           PP P   L+  L  +C L PLP W   +S
Sbjct: 212 PPLPASCLLPPLPASCLLPPLPAWDPSKS 240


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,866,811
Number of Sequences: 237096
Number of extensions: 487335
Number of successful extensions: 1295
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)