Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m20
         (316 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069788-1|AAL39933.1| 1458|Drosophila melanogaster SD02996p pro...    30   0.72 
AE014298-2575|AAF48732.2| 1458|Drosophila melanogaster CG8557-PA...    30   0.72 
AE014298-2574|AAO41695.1| 1740|Drosophila melanogaster CG8557-PB...    30   0.72 
BT003654-1|AAO39658.1| 1273|Drosophila melanogaster AT04875p pro...    28   2.9  
AF281363-1|AAK12372.1| 1854|Drosophila melanogaster virilizer pr...    27   5.0  
AE013599-3583|AAF46988.1| 1854|Drosophila melanogaster CG3496-PA...    27   5.0  

>AY069788-1|AAL39933.1| 1458|Drosophila melanogaster SD02996p
           protein.
          Length = 1458

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 HAPHHALCSHDHSGSGVRSQVLERLEMR 263
           H PHH    H H+G+G   Q  E+L+++
Sbjct: 663 HHPHHHPLQHPHAGAGDPRQTQEQLQLQ 690


>AE014298-2575|AAF48732.2| 1458|Drosophila melanogaster CG8557-PA,
           isoform A protein.
          Length = 1458

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 HAPHHALCSHDHSGSGVRSQVLERLEMR 263
           H PHH    H H+G+G   Q  E+L+++
Sbjct: 663 HHPHHHPLQHPHAGAGDPRQTQEQLQLQ 690


>AE014298-2574|AAO41695.1| 1740|Drosophila melanogaster CG8557-PB,
            isoform B protein.
          Length = 1740

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 180  HAPHHALCSHDHSGSGVRSQVLERLEMR 263
            H PHH    H H+G+G   Q  E+L+++
Sbjct: 945  HHPHHHPLQHPHAGAGDPRQTQEQLQLQ 972


>BT003654-1|AAO39658.1| 1273|Drosophila melanogaster AT04875p
           protein.
          Length = 1273

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 177 PHAPHHALCS-HDHSGSGVRSQVLERLEMRLRSG 275
           PHA HH++ + H H+GS + S  L++ ++R   G
Sbjct: 124 PHAHHHSMRNGHQHNGS-ISSGTLQKQDLRYDIG 156


>AF281363-1|AAK12372.1| 1854|Drosophila melanogaster virilizer
           protein.
          Length = 1854

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 313 RAXLHSTXRAPPPPLRSLISNLSN 242
           R   HST  +PPPP RS   + SN
Sbjct: 218 RRSTHSTDHSPPPPRRSHTHSESN 241


>AE013599-3583|AAF46988.1| 1854|Drosophila melanogaster CG3496-PA
           protein.
          Length = 1854

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 313 RAXLHSTXRAPPPPLRSLISNLSN 242
           R   HST  +PPPP RS   + SN
Sbjct: 218 RRSTHSTDHSPPPPRRSHTHSESN 241


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,629,722
Number of Sequences: 53049
Number of extensions: 165040
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 631882260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)