Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m20
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.29 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   6.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.29
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 265 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 167
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 97  APTRSFYNLRDP*LQPRPRMEVPCS 23
           AP    Y+  +  LQP P + + CS
Sbjct: 420 APPMLLYSFIEQTLQPGPAVSLKCS 444


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 97  APTRSFYNLRDP*LQPRPRMEVPCS 23
           AP    Y+  +  LQP P + + CS
Sbjct: 420 APPMLLYSFIEQTLQPGPAVSLKCS 444


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 18  SQEHGTSIRGRGCSYG 65
           +QEH   ++G  CS+G
Sbjct: 537 TQEHVCGVKGIPCSWG 552


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = -1

Query: 280 PPPLRSLISNLSNT-CDLTPLPEWS 209
           P  L  +   + N  C L P P+WS
Sbjct: 91  PSSLNVISEKIGNGGCLLQPYPDWS 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,467
Number of Sequences: 438
Number of extensions: 895
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)