Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m18
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0547 - 17032318-17032392,17032893-17032962,17032979-170331...    29   3.1  
11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223     29   4.1  
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675...    29   5.5  
06_03_0030 - 15687877-15688083,15688177-15688471,15688551-156887...    28   9.6  

>04_03_0547 -
           17032318-17032392,17032893-17032962,17032979-17033103,
           17033196-17033252,17034152-17034217
          Length = 130

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 318 KTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 416
           K  +R PS GG I    K LL L++ +H H ++H
Sbjct: 89  KDPERKPSLGGDISLPAKILLMLYDQDHTHSFMH 122


>11_04_0163 + 14296868-14297380,14297548-14297622,14298149-14298223
          Length = 220

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 309 NKLKTIKRNPSDGGHIKRKTK-LLFLFNSEHFHIYLH 416
           N +   +R PS GG I   T+ LL L++ +H   Y+H
Sbjct: 176 NNMMDSERKPSLGGEIAPPTEILLMLYDQDHTPTYMH 212


>02_03_0187 -
           16166365-16166571,16166665-16166962,16167197-16167524,
           16167990-16168157,16168803-16168858,16168991-16169076,
           16169846-16169977
          Length = 424

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 34  GHRIQRFSLYFYNESYK*R*IVFVCYDTTRIYMHLRNTIISISYSNVILHNTVLPNEKFF 213
           G  + R+ LYF  + Y  R    +  DT+ I  H+  T+    +   I H  + P  ++ 
Sbjct: 335 GFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKTLTD-EFCGFIRHYVIDPTGEYN 393

Query: 214 VT-V*KLTYKILADPADIVVPQLISKK 291
           +  V K        P D    +L  +K
Sbjct: 394 INKVPKRVQSSAPPPRDQAATKLAPRK 420


>06_03_0030 -
           15687877-15688083,15688177-15688471,15688551-15688721,
           15688968-15689026
          Length = 243

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +1

Query: 34  GHRIQRFSLYFYNESYK*R*IVFVCYDTTRIYMHLRNTIISISYSNVILHNTVLPNEKFF 213
           G  + R+ LYF  + Y  R    +  DT+ I  H+   +    +   I H+ V P  ++ 
Sbjct: 154 GFYVMRYMLYFVEDGYNHRNAEKLGLDTSEILPHVFKALTD-EFCGFICHHVVDPTGEYN 212

Query: 214 VT-V*KLTYKILADPADIVVPQLISKK 291
           +  V +     +  P D    +L  +K
Sbjct: 213 INKVPQRVQSSVPPPRDQAAKKLAPRK 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,830
Number of Sequences: 37544
Number of extensions: 367647
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)