Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m18
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical ...    44   2e-04
AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical ...    44   2e-04
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    31   1.2  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      30   2.1  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    30   2.1  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    30   2.1  
AF068713-4|AAC17795.2|  398|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine r...    29   4.9  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    28   6.5  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    28   8.6  

>AF016423-4|AAX88829.1|  185|Caenorhabditis elegans Hypothetical
           protein F40A3.3b protein.
          Length = 185

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 731 PIAGNFYEAQYDDYVPILYKQLGA 660
           P+ GN ++A+YDDYVPIL KQLGA
Sbjct: 162 PVFGNLFQAEYDDYVPILNKQLGA 185


>AF016423-3|AAB65322.1|  221|Caenorhabditis elegans Hypothetical
           protein F40A3.3a protein.
          Length = 221

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 731 PIAGNFYEAQYDDYVPILYKQLGA 660
           P+ GN ++A+YDDYVPIL KQLGA
Sbjct: 198 PVFGNLFQAEYDDYVPILNKQLGA 221


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 310 FYTKV*VFYLSIEALRCLPGQLVFYTLIFKLLQRIFHLATLCCVVSHYY 164
           FY K   F  S   L CL    +FY  +FK  +++     L  + SH+Y
Sbjct: 10  FYFKQFDFEYSYPGLACLFSFYLFYVYVFKENRKVDEKTALFPITSHFY 58


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +1

Query: 52  FSLYFYNESYK*R*IVFVC------YDTTRIYMHLRNTIISISYSNVILHNTVLPNEK 207
           FS++++ + Y+ +  +++        D+  +  ++R ++ S S+SNV   N V PNE+
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEE 211


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +1

Query: 52  FSLYFYNESYK*R*IVFVC------YDTTRIYMHLRNTIISISYSNVILHNTVLPNEK 207
           FS++++ + Y+ +  +++        D+  +  ++R ++ S S+SNV   N V PNE+
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEE 211


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +1

Query: 52  FSLYFYNESYK*R*IVFVC------YDTTRIYMHLRNTIISISYSNVILHNTVLPNEK 207
           FS++++ + Y+ +  +++        D+  +  ++R ++ S S+SNV   N V PNE+
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEE 211


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +1

Query: 52  FSLYFYNESYK*R*IVFVC------YDTTRIYMHLRNTIISISYSNVILHNTVLPNEK 207
           FS++++ + Y+ +  +++        D+  +  ++R ++ S S+SNV   N V PNE+
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEE 211


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +1

Query: 52  FSLYFYNESYK*R*IVFVC------YDTTRIYMHLRNTIISISYSNVILHNTVLPNEK 207
           FS++++ + Y+ +  +++        D+  +  ++R ++ S S+SNV   N V PNE+
Sbjct: 154 FSIHYFEDLYERKNAIYLRKLLLTELDSNSLLTNIRRSVNSYSFSNVKFTNIVCPNEE 211


>AF068713-4|AAC17795.2|  398|Caenorhabditis elegans Hypothetical
           protein T24A6.8 protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 32  WVIESNVLVSISITKVINDAELFLYVTIRHGFTC 133
           W+ E+NV + +  TK++  ++  + V   HG+ C
Sbjct: 13  WMSENNVEIKLISTKILKPSKCMVCVRPAHGYHC 46


>AF067945-15|AAC17678.2|  286|Caenorhabditis elegans Serpentine
           receptor, class x protein16 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 308 LYKSIGFLLIN*GTTMSAGSASILYVNFQTVTKNFSFGNTVLCSITLL*LIDIIVF 141
           L  S+G  + N    ++A   S +  +F  +TKN +  NT++C I L+ ++ + +F
Sbjct: 13  LVTSLG-TVANLAVFVAARRISSMNSSFGVITKNQAICNTIMCLIFLIYILPLQIF 67


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 400 KC-SELNKNNNFVFLLMCPPSDGFLLIVLSLFYTK 299
           KC    +K NN+ +L++   + G LL  +S FY K
Sbjct: 277 KCFGNRHKANNYGYLILSTTTSGILLAAISQFYLK 311


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +1

Query: 109 YDTTRIYMHLRNTIIS-ISYSNVILHNTVLPNEKFFVTV*KLTYKILADPADIV-VPQLI 282
           +D T + M   N I   ++ SN+      L     FVT   L   + AD  +++   +  
Sbjct: 103 HDETDVLMLTTNLIRKDVNSSNMYESGIALGGLSCFVTP-DLARDLAADVVNLLSCSRNY 161

Query: 283 SKKP--ILLYKINLKQSKGIRPTGDTSKEK 366
           ++K   +LLYKI LK    +RPT    KEK
Sbjct: 162 TRKRAVLLLYKIFLKYPDALRPTFPRLKEK 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,223
Number of Sequences: 27780
Number of extensions: 387781
Number of successful extensions: 962
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)