Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m16
         (345 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB6C7C Cluster: PREDICTED: similar to mitochondr...    42   0.004
UniRef50_Q2VKI7 Cluster: Tes14; n=3; mulleri subgroup|Rep: Tes14...    37   0.11 
UniRef50_Q6CR63 Cluster: Similar to sp|P19955 Saccharomyces cere...    36   0.18 
UniRef50_A0NGR0 Cluster: ENSANGP00000031145; n=2; Culicidae|Rep:...    36   0.24 
UniRef50_Q753R6 Cluster: AFR260Cp; n=1; Eremothecium gossypii|Re...    35   0.43 
UniRef50_Q7S3Z3 Cluster: Predicted protein; n=4; Sordariomycetes...    33   0.98 
UniRef50_A7TS69 Cluster: Putative uncharacterized protein; n=1; ...    33   1.3  
UniRef50_UPI0000F2015F Cluster: PREDICTED: hypothetical protein;...    33   1.7  
UniRef50_A7T177 Cluster: Predicted protein; n=1; Nematostella ve...    33   1.7  
UniRef50_Q00X46 Cluster: Chromosome 13 contig 1, DNA sequence; n...    32   2.3  
UniRef50_UPI00015A6A2B Cluster: UPI00015A6A2B related cluster; n...    32   3.0  
UniRef50_Q4QJ33 Cluster: Putative uncharacterized protein; n=2; ...    31   4.0  
UniRef50_A2R8A2 Cluster: Putative frameshift precursor; n=1; Asp...    31   4.0  
UniRef50_Q4SH35 Cluster: Chromosome 8 SCAF14587, whole genome sh...    31   5.3  
UniRef50_P19955 Cluster: 37S ribosomal protein YMR-31, mitochond...    31   5.3  
UniRef50_UPI0000EBD37E Cluster: PREDICTED: hypothetical protein;...    31   6.9  
UniRef50_UPI00005664BF Cluster: UPI00005664BF related cluster; n...    31   6.9  
UniRef50_A7S1G4 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ...    30   9.2  
UniRef50_A5K1D7 Cluster: Putative uncharacterized protein; n=1; ...    30   9.2  
UniRef50_Q6ZSZ8 Cluster: CDNA FLJ45094 fis, clone BRAWH3030810; ...    30   9.2  

>UniRef50_UPI0000DB6C7C Cluster: PREDICTED: similar to mitochondrial
           ribosomal protein S36; n=2; Apocrita|Rep: PREDICTED:
           similar to mitochondrial ribosomal protein S36 - Apis
           mellifera
          Length = 95

 Score = 41.5 bits (93), Expect = 0.004
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = -1

Query: 99  IPDIDLPARYKRQPLSEEEIAYINGGG 19
           I D+ LPAR++R+P+ E+EIAYIN GG
Sbjct: 67  IEDLYLPARFQRRPIDEKEIAYINRGG 93


>UniRef50_Q2VKI7 Cluster: Tes14; n=3; mulleri subgroup|Rep: Tes14 -
           Drosophila mulleri (Fruit fly)
          Length = 80

 Score = 36.7 bits (81), Expect = 0.11
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -1

Query: 102 AIPDIDLPARYKRQPLSEEEIAYINGGGI 16
           AI D +LPAR+ R+P+   E  YIN GGI
Sbjct: 50  AIEDWELPARFARKPIDPLEAEYINNGGI 78


>UniRef50_Q6CR63 Cluster: Similar to sp|P19955 Saccharomyces
           cerevisiae YFR049w YMR31 ribosomal protein; n=1;
           Kluyveromyces lactis|Rep: Similar to sp|P19955
           Saccharomyces cerevisiae YFR049w YMR31 ribosomal protein
           - Kluyveromyces lactis (Yeast) (Candida sphaerica)
          Length = 133

 Score = 35.9 bits (79), Expect = 0.18
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -1

Query: 135 QSQPAAAMSTGAIPDIDLPARYKRQPLSEEEIAYINGGGI 16
           +++P      G+I    LP R+K +P+ E+EI  INGGGI
Sbjct: 96  KNRPLEENEVGSISQ--LPPRFKLRPMDEQEIEIINGGGI 133


>UniRef50_A0NGR0 Cluster: ENSANGP00000031145; n=2; Culicidae|Rep:
           ENSANGP00000031145 - Anopheles gambiae str. PEST
          Length = 84

 Score = 35.5 bits (78), Expect = 0.24
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = -1

Query: 267 MVRLSTILN---RIPVIKFRKXXXXXXXXXXXXXXXXXXXXXXXXPVQSQPAAAMSTG-A 100
           MV L ++L+   R+P+IKFRK                              A ++S+G A
Sbjct: 1   MVMLRSVLSSAKRVPLIKFRKGGPFQEAASHTAGGAAANTAAPAH------ARSVSSGEA 54

Query: 99  IPDIDLPARYKRQPLSEEEIAYINGGG 19
           I +  LPARY+R+P+ + E+  IN GG
Sbjct: 55  IEEWQLPARYRRKPIDDVEMDCINRGG 81


>UniRef50_Q753R6 Cluster: AFR260Cp; n=1; Eremothecium gossypii|Rep:
           AFR260Cp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 119

 Score = 34.7 bits (76), Expect = 0.43
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -1

Query: 90  IDLPARYKRQPLSEEEIAYINGGGI 16
           +DLPARY+ +PL + E+  IN GGI
Sbjct: 94  LDLPARYRTRPLEDAEMECINQGGI 118


>UniRef50_Q7S3Z3 Cluster: Predicted protein; n=4;
           Sordariomycetes|Rep: Predicted protein - Neurospora
           crassa
          Length = 130

 Score = 33.5 bits (73), Expect = 0.98
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -1

Query: 87  DLPARYKRQPLSEEEIAYINGG 22
           DLPAR++RQPL+E EI  I  G
Sbjct: 105 DLPARFRRQPLTEAEIEAIESG 126


>UniRef50_A7TS69 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 126

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 129 QPAAAMSTGAIPDIDLPARYKRQPLSEEEIAYINGGGIV 13
           +P  A    AI +  LPAR++ +P+ E E+  INGGG +
Sbjct: 90  RPLMAGEVSAISE--LPARFRFKPMDEAELDSINGGGAI 126


>UniRef50_UPI0000F2015F Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 1973

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 166 HCCCYCWNPCAKPACCGNEYWCYTRHRPTSTLQETTTLRRRDCLYQWRRN 17
           + C YC  PCAKP+        +T  RP   +    + + +  LY+ R++
Sbjct: 131 YVCTYCGRPCAKPSVLQKHIRSHTGERPYPCVPCGFSFKTKSNLYKHRKS 180


>UniRef50_A7T177 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 121

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 157 CYCWNPCAKPACCGNEYWCY 98
           C+C+  CA    C  EYWCY
Sbjct: 89  CWCYQSCACYQSCALEYWCY 108


>UniRef50_Q00X46 Cluster: Chromosome 13 contig 1, DNA sequence; n=5;
           root|Rep: Chromosome 13 contig 1, DNA sequence -
           Ostreococcus tauri
          Length = 1990

 Score = 32.3 bits (70), Expect = 2.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 157 CYCWNPCAKPACCGNEYWCYT 95
           C  W  CA P  CGNEY+ YT
Sbjct: 603 CTAWVFCAAPGGCGNEYYEYT 623


>UniRef50_UPI00015A6A2B Cluster: UPI00015A6A2B related cluster; n=1;
           Danio rerio|Rep: UPI00015A6A2B UniRef100 entry - Danio
           rerio
          Length = 479

 Score = 31.9 bits (69), Expect = 3.0
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -3

Query: 163 CCCYCWNPCAKPACCGNEYWCYTRHRPTSTLQETTT 56
           CCCY   PC    CC  E     +HR     Q   T
Sbjct: 205 CCCYVRCPCCPQTCCCPEKAAVMQHRLMKEAQRAMT 240


>UniRef50_Q4QJ33 Cluster: Putative uncharacterized protein; n=2;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 460

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 163 CCCYCWNPCAKPACCGNEYWCYTRHRPTSTLQ 68
           CCC C + C + A C  + +  TR +P   L+
Sbjct: 311 CCCCCLHGCGEKAPCNTKRYTATRQKPHHPLR 342


>UniRef50_A2R8A2 Cluster: Putative frameshift precursor; n=1;
           Aspergillus niger|Rep: Putative frameshift precursor -
           Aspergillus niger
          Length = 534

 Score = 31.5 bits (68), Expect = 4.0
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -1

Query: 138 VQSQPAAAMSTGAIPDIDLPARYKR 64
           VQSQ AAA+S GAIP  D PA++ R
Sbjct: 207 VQSQ-AAALSNGAIPQDDFPAQFDR 230


>UniRef50_Q4SH35 Cluster: Chromosome 8 SCAF14587, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 8
           SCAF14587, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 1692

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 166 HCCCYCWNPCAKPACCGNEYWCYTRHRPTSTLQETTTLRRRDCLYQWRRN 17
           + C YC  PCAKP+        +T  RP        + + +  LY+ R++
Sbjct: 67  YVCTYCGRPCAKPSVLQKHIRSHTGERPYPCPPCGFSFKTKSNLYKHRKS 116


>UniRef50_P19955 Cluster: 37S ribosomal protein YMR-31,
           mitochondrial precursor; n=3; Saccharomycetales|Rep: 37S
           ribosomal protein YMR-31, mitochondrial precursor -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 123

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = -1

Query: 87  DLPARYKRQPLSEEEIAYINGGG 19
           +LPAR++ +P++E E+  IN GG
Sbjct: 99  ELPARFRYKPINEHELESINSGG 121


>UniRef50_UPI0000EBD37E Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 149

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 181 RSFRTHCCCYCWNPCAKPACC 119
           R +R HCCC    P   P CC
Sbjct: 30  RCYRRHCCCEAPTPPLTPPCC 50


>UniRef50_UPI00005664BF Cluster: UPI00005664BF related cluster; n=1;
           Mus musculus|Rep: UPI00005664BF UniRef100 entry - Mus
           musculus
          Length = 138

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 172 RTHCCCYCWNP-CAKPAC 122
           R  CCC+C  P C+KP+C
Sbjct: 121 RPACCCHCCEPSCSKPSC 138


>UniRef50_A7S1G4 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 276

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 172 RTHCCC--YCWNPCAKPACCGNEYWCYTRH 89
           R HCC   +C++ C +  CC  ++ C   H
Sbjct: 114 RDHCCTRDHCYHCCTREHCCTRDHCCTRDH 143


>UniRef50_A5K1D7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 219

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 90  IDLPARYKRQPLSEEEIAYINGGG 19
           IDLP      PLSEEEI  +N GG
Sbjct: 176 IDLPPGMCSPPLSEEEIEQVNSGG 199


>UniRef50_Q6ZSZ8 Cluster: CDNA FLJ45094 fis, clone BRAWH3030810;
           n=1; Homo sapiens|Rep: CDNA FLJ45094 fis, clone
           BRAWH3030810 - Homo sapiens (Human)
          Length = 232

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 178 SFRTHCCCYCWNPCAKPACCG 116
           S   +C C  W PC +PAC G
Sbjct: 88  SISLNCGCPAWVPCERPACVG 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,840,987
Number of Sequences: 1657284
Number of extensions: 3701887
Number of successful extensions: 9358
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9316
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 10703468375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)