Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m16
         (345 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   3.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   6.2  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    20   8.2  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    20   8.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   8.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/33 (27%), Positives = 12/33 (36%)
 Frame = -3

Query: 145 NPCAKPACCGNEYWCYTRHRPTSTLQETTTLRR 47
           NPC    C      C+T   P  T  +   L +
Sbjct: 691 NPCTTCFCENGNNKCFTMECPQVTCPDNMKLEK 723



 Score = 19.8 bits (39), Expect = 8.2
 Identities = 5/10 (50%), Positives = 5/10 (50%)
 Frame = -3

Query: 151 CWNPCAKPAC 122
           CW  C K  C
Sbjct: 885 CWRECDKATC 894


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 109  YWCYTRHRPTSTLQETTT 56
            +W  T  R T+T + TTT
Sbjct: 1051 WWTTTTTRRTTTTRPTTT 1068


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 193 TGMTSPTFTKF 225
           +G+TSPT  KF
Sbjct: 61  SGVTSPTIMKF 71


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 193 TGMTSPTFTKF 225
           +G+TSPT  KF
Sbjct: 61  SGVTSPTIMKF 71


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 145 NPCAKPACCGNEYWCYTRHRP 83
           +PC   A C +    YT H P
Sbjct: 68  SPCLNGATCQDHTTHYTCHCP 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,858
Number of Sequences: 336
Number of extensions: 1060
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6770240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)