Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m16
         (345 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF273708-1|AAL35411.1|  118|Drosophila melanogaster PFTAIRE-inte...    28   2.8  
AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA...    28   2.8  
AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p pro...    27   5.0  
AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-P...    27   5.0  
AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-P...    27   5.0  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    27   6.5  

>AF273708-1|AAL35411.1|  118|Drosophila melanogaster
           PFTAIRE-interacting factor 2 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 169 THCCCYCWNPCAKPACCG 116
           T CC  C  PC  P CCG
Sbjct: 86  TPCCTPCCTPCCSP-CCG 102



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
 Frame = -3

Query: 169 THCCCYCWNPCAKPAC--CG 116
           T CC  C  PC  P C  CG
Sbjct: 94  TPCCSPCCGPCCSPCCSPCG 113



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 163 CCCYCWNPCAKPACCG 116
           CC  C  PC  P CCG
Sbjct: 33  CCSPCCGPCCSP-CCG 47


>AE014297-475|AAF54113.3|  118|Drosophila melanogaster CG31483-PA
           protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 169 THCCCYCWNPCAKPACCG 116
           T CC  C  PC  P CCG
Sbjct: 86  TPCCTPCCTPCCSP-CCG 102



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
 Frame = -3

Query: 169 THCCCYCWNPCAKPAC--CG 116
           T CC  C  PC  P C  CG
Sbjct: 94  TPCCSPCCGPCCSPCCSPCG 113



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 163 CCCYCWNPCAKPACCG 116
           CC  C  PC  P CCG
Sbjct: 33  CCSPCCGPCCSP-CCG 47


>AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p
           protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 166 HCCCYCWNPCAKPACCGN 113
           +CC YC +PC    CC N
Sbjct: 752 NCCNYCCSPCG--CCCSN 767


>AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-PB,
           isoform B protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 166 HCCCYCWNPCAKPACCGN 113
           +CC YC +PC    CC N
Sbjct: 151 NCCNYCCSPCG--CCCSN 166


>AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-PA,
           isoform A protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 166 HCCCYCWNPCAKPACCGN 113
           +CC YC +PC    CC N
Sbjct: 752 NCCNYCCSPCG--CCCSN 767


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
            protein.
          Length = 23015

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 151  CWNPCAKPACCGNEYWC 101
            C+NPC +P  CG    C
Sbjct: 2902 CFNPCLQPQACGQNAEC 2918



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 151  CWNPCAKPACCGNEYWCYT 95
            C +PCA P  CG    C T
Sbjct: 3154 CVDPCADPTACGTNAHCQT 3172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,874
Number of Sequences: 53049
Number of extensions: 188688
Number of successful extensions: 566
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 819378027
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)