Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m16
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    29   0.89 
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    29   0.89 
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    29   0.89 
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    28   1.6  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical pr...    26   8.3  

>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 199 CRYKLSRSFRTHCCCYCWNPCAKPACCG 116
           CR K   +    CCC     C +P CCG
Sbjct: 77  CRPKCCCTCCRTCCCTRCCTCCRPCCCG 104



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 199 CRYKLSRSFRTHCCCYCWNPCAKPACC 119
           CR +     R  CCC C   C    CC
Sbjct: 69  CRPRCCCCCRPKCCCTCCRTCCCTRCC 95


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 199 CRYKLSRSFRTHCCCYCWNPCAKPACCG 116
           CR K   +    CCC     C +P CCG
Sbjct: 79  CRPKCCCTCCRTCCCTRCCTCCRPCCCG 106



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 199 CRYKLSRSFRTHCCCYCWNPCAKPACC 119
           CR +     R  CCC C   C    CC
Sbjct: 71  CRPRCCCCCRPKCCCTCCRTCCCTRCC 97


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 199 CRYKLSRSFRTHCCCYCWNPCAKPACCG 116
           CR K   +    CCC     C +P CCG
Sbjct: 82  CRPKCCCTCCRTCCCTRCCTCCRPCCCG 109



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 199 CRYKLSRSFRTHCCCYCWNPCAKPACC 119
           CR +     R  CCC C   C    CC
Sbjct: 74  CRPRCCCCCRPKCCCTCCRTCCCTRCC 100


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 172 RTHCCCYCWNPCAKPACCG 116
           RT CC  C   C +P CCG
Sbjct: 105 RTCCCTRCCT-CCRPCCCG 122


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 172 RTHCCCYCWNPCAKPACCG 116
           RT CC  C   C +P CCG
Sbjct: 103 RTCCCTRCCT-CCRPCCCG 120


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 172 RTHCCCYCWNPCAKPACCG 116
           RT CC  C   C +P CCG
Sbjct: 104 RTCCCTRCCT-CCRPCCCG 121


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 172 RTHCCCYCWNPCAKPACCG 116
           RT CC  C   C +P CCG
Sbjct: 104 RTCCCTRCCT-CCRPCCCG 121


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 172 RTHCCCYCWNPCAKPACCG 116
           RT CC  C   C +P CCG
Sbjct: 105 RTCCCTRCCT-CCRPCCCG 122


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 235 SCYKIS*RWG*SCRYKLSRSFRTHCCCYCWN 143
           SC+ +S R+G  C Y  S ++  + CC+  N
Sbjct: 45  SCFSVSARYGAICHY--SSNYNNYLCCHSQN 73


>Z82052-5|CAB04828.1|  382|Caenorhabditis elegans Hypothetical
           protein T25E12.10 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 61  TTLRRRDCLYQWRRNCLV 8
           TT+R  DC Y + +NC +
Sbjct: 253 TTIRDPDCKYNYNKNCYI 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,907,936
Number of Sequences: 27780
Number of extensions: 90455
Number of successful extensions: 288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)