Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16m15
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 256 2e-68
03_01_0547 + 4093196-4093657,4094267-4095148 256 2e-68
03_01_0544 + 4082528-4082989,4083585-4084466 256 2e-68
03_01_0543 + 4076981-4077442,4078145-4079026 256 2e-68
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 66 4e-11
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 62 4e-10
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 62 4e-10
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 56 4e-08
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 52 5e-07
02_04_0462 + 23131433-23132836 42 7e-04
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 39 0.004
11_06_0516 + 24502645-24504507 29 4.1
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.4
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 5.4
07_03_0634 + 20125242-20125688 28 7.2
06_03_1165 - 28106604-28106915 28 7.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 7.2
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941... 28 7.2
01_06_0191 - 27334412-27335155 28 9.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 256 bits (626), Expect = 2e-68
Identities = 114/160 (71%), Positives = 139/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P+ + TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGM 389
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 256 bits (626), Expect = 2e-68
Identities = 114/160 (71%), Positives = 139/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P+ + TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGM 389
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 256 bits (626), Expect = 2e-68
Identities = 114/160 (71%), Positives = 139/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P+ + TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGM 389
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 256 bits (626), Expect = 2e-68
Identities = 114/160 (71%), Positives = 139/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P+ + TEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT
Sbjct: 270 PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFT 329
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
+QVI++NHPGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGM 389
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 390 VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 65.7 bits (153), Expect = 4e-11
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 9/159 (5%)
Frame = -2
Query: 748 LXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGA 569
L + P +V + + ++ A P +NV + + +++ G+V S NP
Sbjct: 258 LLVMPNKTNVKVIGISLDEHKVRRAGPAENVRVKLSGIEDEDIMAGFVLS-SIGNPVGAV 316
Query: 568 ADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-- 401
+F AQ+ +L + GY VL H+ C+ ++ E++D + K + K
Sbjct: 317 TEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPK 376
Query: 400 -----IKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 299
+K+G + + + +C+E+F +FP LGRF +R
Sbjct: 377 RKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 62.5 bits (145), Expect = 4e-10
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Frame = -2
Query: 742 LPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP--PKGA 569
+ P VKS+E + A GDNV +++ + +L + G NP P
Sbjct: 515 ISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKL----ILGGILCNPGFPVPV 570
Query: 568 ADFTA-QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 392
++F +V+VL+ I GY H A + +I +D+ GK ++ P+ +KS
Sbjct: 571 SNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKS 629
Query: 391 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 266
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 630 KQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 62.5 bits (145), Expect = 4e-10
Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Frame = -2
Query: 742 LPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP--PKGA 569
+ P VKS+E + A GDNV +++ + +L + G NP P
Sbjct: 515 ISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKL----ILGGILCNPGFPVPV 570
Query: 568 ADFTA-QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKS 392
++F +V+VL+ I GY H A + +I +D+ GK ++ P+ +KS
Sbjct: 571 SNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKS 629
Query: 391 GDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 266
A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 630 KQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 55.6 bits (128), Expect = 4e-08
Identities = 37/153 (24%), Positives = 71/153 (46%)
Frame = -2
Query: 715 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 536
VK++E + + A GDNV ++ + + G V + P A+ +++VL+
Sbjct: 508 VKTIERNSSSCNLARAGDNVAIGLQGIDPSHIMPGGVICHP-DYPVSVASCLELKILVLD 566
Query: 535 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 356
I G ++ +I ++++TGK+++ P+ + S A++ + K
Sbjct: 567 ITVPILVGL---------QVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEK 617
Query: 355 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+CVE F LGR +R T+AVG++ V
Sbjct: 618 EVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P +V SV + ++ A PG+NV + + ++ G+V K NP ++F
Sbjct: 217 PNKANVKVISVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFR 275
Query: 556 AQVIVLN--HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 395
AQ+ +L + GY VL H+ C+ E+ E++D + K ++ K K
Sbjct: 276 AQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELIEEIDLKRRKEGDIKKKKSK 331
>02_04_0462 + 23131433-23132836
Length = 467
Score = 41.5 bits (93), Expect = 7e-04
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 3/156 (1%)
Frame = -2
Query: 715 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 536
V VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ +
Sbjct: 324 VTGVEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKD 383
Query: 535 HPGQIS---NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLV 365
G+ S GY P T + +I D K GD + +
Sbjct: 384 EGGRHSPFFPGYRPQFYMRTTDVTGNVTKIMNDKDEEA--------KMCMPGDRVKMVVE 435
Query: 364 PSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+P+ E RFA+R+ +TV GVI +
Sbjct: 436 LIQPVACEQGM------RFAIREGGKTVGAGVINTI 465
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 39.1 bits (87), Expect = 0.004
Identities = 41/161 (25%), Positives = 66/161 (40%)
Frame = -2
Query: 739 PPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADF 560
P + T V VEM + L GDNVG ++ + +++RG V K K F
Sbjct: 307 PSGPLKTTVTGVEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKF 364
Query: 559 TAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAA 380
A++ VL +T L ++ + A++ KV G + ++ +G
Sbjct: 365 EAEIYVLTK--DEGGRHTAFLSNYSPQFYFRTADVTGKVVLPDGVEMVMPGDNVTAG--- 419
Query: 379 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
L+ PL P RFA+R+ +TV GV+ V
Sbjct: 420 -FELISPVPL--------EPGQRFALREGGRTVGAGVVSKV 451
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -2
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 526 QISNG 512
+I G
Sbjct: 170 EIRRG 174
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 127
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 541 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 398
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>07_03_0634 + 20125242-20125688
Length = 148
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3
Query: 156 CMKNCAVNS-SSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNS 332
C + A S S++ + A ++A T PP ++LT + L R P G
Sbjct: 35 CANSVAYLSLSAFVMSGRAVASAAATASPPVGVQLTVTSEHSEWSILSPRKTCHPTGKVK 94
Query: 333 WKDSTHRGLE---GTKLTMAASPDLMDFGLTSVDLP 431
WK +E GT P+ G +V LP
Sbjct: 95 WKGRREHFVERLVGTAHLPRRRPERQPQGSGAVPLP 130
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -1
Query: 716 SQVCGDAPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW 600
SQ G A SSP + R R +R E + A L CW
Sbjct: 62 SQTGGAAASSSPAAACGRAARSKRSEEEKMQKAYHLVCW 100
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 392
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 393 DLMDFGLTSVDLPVRR 440
L LT ++ +R
Sbjct: 326 ALSPIALTCMEPKKKR 341
>01_04_0068 +
15693131-15693533,15693604-15693803,15693879-15694162,
15694251-15694428
Length = 354
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 578
YHC +P EV+ VE +E L+ PG + S + R Y + ++PP
Sbjct: 11 YHCRPIPAGYSKVEVELVEAAYEDLELDYPGG-------DASTRHKPRHYTVAQAVHHPP 63
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 177 NSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTHRG 356
N+ S PL +S V LP +L + P A + TAK +GG++ S G
Sbjct: 164 NALSAVKPLAVYSVDKVLLP----FELFGVKAPAAAPT--ASTAKPKKGGSTEAASGPAG 217
Query: 357 LEGTKLTMAASPDLMDFGLTSV 422
E + T AAS + +G+ +
Sbjct: 218 AEDAEPTGAASARAVGWGVAGL 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,842,835
Number of Sequences: 37544
Number of extensions: 461091
Number of successful extensions: 1321
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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