Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16m15
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 267 5e-72
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 267 5e-72
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 267 5e-72
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 5e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.17
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.17
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.17
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 30 1.6
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 30 1.6
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 30 1.6
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.7
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 29 3.7
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 29 3.7
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 29 3.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 28 6.5
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 267 bits (655), Expect = 5e-72
Identities = 124/160 (77%), Positives = 138/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P N+ TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 248 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 307
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 308 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 367
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 368 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 267 bits (655), Expect = 5e-72
Identities = 124/160 (77%), Positives = 138/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P N+ TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 267 bits (655), Expect = 5e-72
Identities = 124/160 (77%), Positives = 138/160 (86%)
Frame = -2
Query: 736 PANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 557
P N+ TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 556 AQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAI 377
AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA I
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGI 401
Query: 376 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
V L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 402 VELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 83.4 bits (197), Expect = 2e-16
Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 1/173 (0%)
Frame = -2
Query: 772 CVEXRYHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDS 593
CV+ + L + P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQ-KGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIIC-S 420
Query: 592 KNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEV 413
++ K F A+V+VL H I++GY+ VL +A + +D++TG+
Sbjct: 421 PDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA 480
Query: 412 NPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 257
K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 481 --KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 562 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 383
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 382 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 562 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 383
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 382 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = -2
Query: 715 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 536
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 535 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 395
HP I Y +L + + ++V RTG +V K I+
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 727 IXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 548
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 354
Query: 547 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 371
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 355 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 404
Query: 370 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
L + + +E P RF +R +T+ GV V
Sbjct: 405 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 727 IXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 548
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 547 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 371
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 370 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 727 IXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 548
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 547 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 371
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 370 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGD--SKNN 584
+ C+ L + E+ + E ++ LQ+ + +N+ L + A + S +
Sbjct: 368 FECIALKNQTLQLEIDASEKRYQELQKETSALRNRYQ-ENLDATILMQTPSAKERRSSSR 426
Query: 583 PPKGAADFTAQVIVLNHPGQISNGYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTE 416
P + + + ++ VLD C + C+ + +K+K + T KSTE
Sbjct: 427 PKRRETQYRPSPARMALFAEVETSEDAVLDLQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGD--SKNN 584
+ C+ L + E+ + E ++ LQ+ + +N+ L + A + S +
Sbjct: 368 FECIALKNQTLQLEIDASEKRYQELQKETSALRNRYQ-ENLDATILMQTPSAKERRSSSR 426
Query: 583 PPKGAADFTAQVIVLNHPGQISNGYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTE 416
P + + + ++ VLD C + C+ + +K+K + T KSTE
Sbjct: 427 PKRRETQYRPSPARMALFAEVETSEDAVLDLQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGD--SKNN 584
+ C+ L + E+ + E ++ LQ+ + +N+ L + A + S +
Sbjct: 368 FECIALKNQTLQLEIDASEKRYQELQKETSALRNRYQ-ENLDATILMQTPSAKERRSSSR 426
Query: 583 PPKGAADFTAQVIVLNHPGQISNGYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTE 416
P + + + ++ VLD C + C+ + +K+K + T KSTE
Sbjct: 427 PKRRETQYRPSPARMALFAEVETSEDAVLDLQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 141 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 296
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 195 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 347
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGD--SKNN 584
+ C+ L + E+++ E ++ LQ+ + +N+ L + A + S +
Sbjct: 438 FECIALKNQTLQLEIEASEKRYQELQKETSALRNRYQ-ENLDATILMQTPSAKERRSSSR 496
Query: 583 PPKGAADFTAQVIVLNHPGQISNGYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTE 416
P + + + ++ VLD C ++C+ + +K+K + T KS E
Sbjct: 497 PKRRETQYRPSPARMALFAEVETSEDAVLDLQCQNEKLSCELSSLKDKHEEATSKSIE 554
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGD--SKNN 584
+ C+ L + E+++ E ++ LQ+ + +N+ L + A + S +
Sbjct: 438 FECIALKNQTLQLEIEASEKRYQELQKETSALRNRYQ-ENLDATILMQTPSAKERRSSSR 496
Query: 583 PPKGAADFTAQVIVLNHPGQISNGYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTE 416
P + + + ++ VLD C ++C+ + +K+K + T KS E
Sbjct: 497 PKRRETQYRPSPARMALFAEVETSEDAVLDLQCQNEKLSCELSSLKDKHEEATSKSIE 554
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Frame = -2
Query: 757 YHCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGD--SKNN 584
+ C+ L + E+++ E ++ LQ+ + +N+ L + A + S +
Sbjct: 436 FECIALKNQTLQLEIEASEKRYQELQKETSALRNRYQ-ENLDATILMQTPSAKERRSSSR 494
Query: 583 PPKGAADFTAQVIVLNHPGQISNGYTPVLD--CHTAHIACKFAEIKEKVDRRTGKSTE 416
P + + + ++ VLD C ++C+ + +K+K + T KS E
Sbjct: 495 PKRRETQYRPSPARMALFAEVETSEDAVLDLQCQNEKLSCELSSLKDKHEEATSKSIE 552
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 715 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 536
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 535 H 533
H
Sbjct: 509 H 509
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -2
Query: 754 HCLXLPPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK--NNP 581
H PP E+ S+ + QE+ + GF+ +N + R G GDS ++P
Sbjct: 17 HNPNFPPQFDQLELDSLLYGTDESQESTSSSSFGFSDQNAGFRS-RDGGSLGDSSSDSSP 75
Query: 580 PKGAADFT 557
P A+FT
Sbjct: 76 PLSCANFT 83
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 549 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 680
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,390,741
Number of Sequences: 27780
Number of extensions: 392337
Number of successful extensions: 1084
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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