Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m12
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.61 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   3.3  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    26   5.7  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   7.6  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
 Frame = +1

Query: 118 VIDLKKFTFLSLKYLITIFGDLGILLSDR*L*MSKTNLFSIKRFFKL*STIALCEF*TKS 297
           VID+     +S  Y + ++ D  +LL      ++  +L  I   F L    A C F   S
Sbjct: 203 VIDVVPADCISSNYALYVYSDAVVLLESHEKFIASYSLAEITSVFVLADGTA-CIFTLSS 261

Query: 298 E---RSSRTVEPSLIMISK*----PSKSASRIECAT*SLLPYDHK------TKTQPISCN 438
               +  ++ EP   +ISK     P KS + ++    SL  Y  K      T+    SCN
Sbjct: 262 STLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTEGTVDSCN 321

Query: 439 SCKLSYT 459
            CKLS T
Sbjct: 322 LCKLSNT 328


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -2

Query: 392 RDHVAHSMRDADLEGYFDIIISEGSTVREERSDLVQNSHNAIVDYNLKKRFIENKFVFDI 213
           R  +   M +  LEG   + + +G++   E+   VQ SH  +V       +   K    +
Sbjct: 75  RQRLQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRL 134

Query: 212 HNHRSDNNIPKSPKIVI 162
              R  + IP  P+IV+
Sbjct: 135 KKEREISEIP-VPEIVL 150


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -1

Query: 711 RRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF-VS*RMVSVATLQSGLSQKRIFDVGI 535
           RRQ  R QA++  R  + S+G +  + Q ++N+F  S R   +       ++K ++D   
Sbjct: 174 RRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTIS 233

Query: 534 SARGRVRFGQHSHNRRGANSNSR 466
              G  R G  S  +   +++SR
Sbjct: 234 EDDGLKRGGSVSKLKPTFSNDSR 256


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 519 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 608
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,552,432
Number of Sequences: 5004
Number of extensions: 78793
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)