Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16m07
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 30 0.43
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.0
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 4.0
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 5.3
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.3
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 26 5.3
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c... 26 7.0
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 9.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 9.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.3
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 777 PSSTSRTTGAXTPSRPTPTRELTTSAGTIPRTPVLRTWASWTSPRAT 637
P++ SRT+ T P PT +T SA I P + ++ P A+
Sbjct: 895 PAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTAS 941
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = -3
Query: 781 NAFKYIKDNGGXDTEQTYPYEGVDDKCRYNPKNTGAEDVGFVDIPEGDEQKLMEAVATVG 602
N ++Y+KD+ + +GVDDK + + +GF D D ++ + +G
Sbjct: 293 NDYRYLKDS-------VHIIDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMG 345
Query: 601 PVSVAIDAS 575
+ V D S
Sbjct: 346 NIDVGADRS 354
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 601 PVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHG 500
P S + D SF +SSG +++E + +D D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -1
Query: 786 WTTPSSTSRTTGAXTPSRPTPTRELTTSAGTIPRT--PVLRTWASWTSPRATNRS 628
++TP S S P PT LT+S IP T P + T+P +N +
Sbjct: 384 FSTPISGSSFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNT 438
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 777 PSSTSRTTGAXTPSRPTPTRELTTSAGTIPRTPVLRTWAS 658
P+S + ++ PSRP PT ++S+ + + ++T S
Sbjct: 241 PTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTS 280
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -1
Query: 783 TTPSSTSRTTGAXTPSRPTPTRELTTSAGTIPRTPVLRTWASWTSPRATNRS 628
T+P + T + P TP + +PR P+ + +S +SP +T S
Sbjct: 141 TSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTSS 192
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 328 SLPRSCNIHISYVYLWLS--YLCNMYNS 251
+LP S + I YVY W LCN+ +S
Sbjct: 290 TLPHSSTVAIMYVYSWTGTVSLCNLVSS 317
>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 434 PRVLHEPVVHALLVGAVT 487
P V H P+ H LL G VT
Sbjct: 198 PLVAHSPLAHGLLTGRVT 215
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 9.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 658 VDIPEGDEQKLMEAVATVGPVSVAID 581
+D+P G + L+ A T P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 774 SSTSRTTGAXTPSRPTPTRELTTSAGTIPRTPV 676
S T+ TT + TP+ P PT + + R PV
Sbjct: 579 SITTTTTPSITPADPVPTSPKPLAIEPVKRKPV 611
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 579 ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 719
+S A T P + ++++ S+P ST +S P+ ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,278
Number of Sequences: 5004
Number of extensions: 46136
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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