Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m06
         (557 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   263   1e-70
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   263   1e-70
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   263   1e-70
BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p pro...    35   0.065

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  263 bits (644), Expect = 1e-70
 Identities = 124/171 (72%), Positives = 139/171 (81%)
 Frame = -2

Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           M+AKG L+EYEV+GRKLPSE EP+ PLYKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           IV             KNFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKE 20
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRK 171


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  263 bits (644), Expect = 1e-70
 Identities = 124/171 (72%), Positives = 139/171 (81%)
 Frame = -2

Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           M+AKG L+EYEV+GRKLPSE EP+ PLYKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           IV             KNFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKE 20
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRK 171


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  263 bits (644), Expect = 1e-70
 Identities = 124/171 (72%), Positives = 139/171 (81%)
 Frame = -2

Query: 532 MKAKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           M+AKG L+EYEV+GRKLPSE EP+ PLYKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           IV             KNFGIWLRY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKE 20
           AHSIQIIKV+ I AA  RR  VKQFH+S I+FPL +RVHH      F++++
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRK 171


>BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p
           protein.
          Length = 328

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 532 MKAKGQLREYEVIGRKLP 479
           M+AKG L+EYEV+GRKLP
Sbjct: 1   MRAKGLLKEYEVVGRKLP 18


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,458,421
Number of Sequences: 53049
Number of extensions: 540857
Number of successful extensions: 1936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1936
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)