Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m06
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   198   2e-51
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   4.0  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   5.2  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      27   6.9  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  198 bits (483), Expect = 2e-51
 Identities = 90/167 (53%), Positives = 120/167 (71%), Gaps = 1/167 (0%)
 Frame = -2

Query: 529 KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 353
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 352 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 173
           I+             KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 172 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTF 32
           A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVF 170


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 182 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 54
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 182 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 54
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 185 TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 54
           +Q  +S N D+ +G  +GCCV     +  P  +H       C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 111 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRRP 16
           R  SST  P+DS C  +  +TR   P  +R P
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAP 244


>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 323 FLWNFLNRDNFTSGLLELLKLSQEIPETRFGDNWIRRENSHFIQGRLGLVLRRELAADNL 502
           F   F++R N ++    L+++   +  T + ++W+     +F  GR  L+         L
Sbjct: 23  FCLPFVDRKNLSNPFYRLVQIDIFVNITCYINSWLAIRLEYFEIGRTFLIFLESSLPGCL 82

Query: 503 IFSQLSFSLHF 535
             S+L  SL+F
Sbjct: 83  TLSKLFVSLYF 93


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 111 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRRP 16
           R  SST  P+DS C  +  +TR   P  +R P
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAP 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,145
Number of Sequences: 27780
Number of extensions: 264337
Number of successful extensions: 809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)