Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16m05
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    80   3e-16
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    27   3.6  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   6.2  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   8.2  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
 Frame = -1

Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXX 537
           E++G K  NI K+  + EE D  K   E  +K+YE   + L   LG  + +  V      
Sbjct: 510 EFEGKKLVNITKDGLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVEKVVVSNKIVG 569

Query: 536 XXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQ 357
                    +GW+ NMER+  + A +   D     +++ +K  EINP+ PI+AEL ++V+
Sbjct: 570 SPCLLTTGQYGWSANMERIMKAQALR---DTSMSAYMSSRKTFEINPKSPIIAELKKKVE 626

Query: 356 XXXXXXXXXXXAHT-LYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
                        T LY TA L SG+ L +  A  +A  +  ++  +LGL
Sbjct: 627 ENGAEDRSVKDLATILYETALLSSGFTLDDPSA--YAQRINRLI--SLGL 672


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 719 PEYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPL 606
           P+Y+G+  ++  K++         +E+++ YKK YEPL
Sbjct: 283 PDYEGYDTESALKDL---------RERVDLYKKYYEPL 311


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 620 QYEPLTRWLGDKLGSWITRAT 558
           Q E   RWLG +LG W+   T
Sbjct: 289 QTEKGVRWLGKRLGEWLLDIT 309


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 689 IAKEIFDXEEGDRAKEKLEAYKKQ 618
           I + I   EE  +AKEKLE +KK+
Sbjct: 64  ITQNIKIDEEDSQAKEKLEEFKKR 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,519
Number of Sequences: 5004
Number of extensions: 12235
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)