Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16m05
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0042 + 473912-474058,474208-474349,474442-476264 75 6e-14
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 72 4e-13
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 71 9e-13
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 71 9e-13
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 71 9e-13
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 71 1e-12
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 70 2e-12
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 67 2e-11
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 63 2e-10
06_03_0528 + 21782567-21782651,21783355-21783563,21784095-217842... 30 2.1
08_02_0012 - 11247424-11247702 29 4.9
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 28 8.6
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 74.9 bits (176), Expect = 6e-14
Identities = 50/169 (29%), Positives = 77/169 (45%)
Frame = -1
Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXX 537
EYDG K + KE ++ D AKE+ K+ +EPL + + D LG + + V
Sbjct: 513 EYDGKKLVSATKEGLKLDDDDDAKER----KRSFEPLCKVIKDILGDRVEKVVVSDRIVD 568
Query: 536 XXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQ 357
+GWT NMER+ + A + D +++ KK +EINP + I+ EL +R
Sbjct: 569 SPCCLVTGEYGWTANMERIMKAQALR---DSSMGAYMSSKKTMEINPENGIMEELRKRAD 625
Query: 356 XXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
L+ TA L SG+ L + FA + ML+ L +
Sbjct: 626 ADANDKSVRDLVLLLFETALLTSGFSLDDPNT--FAARIHRMLKLGLNI 672
>06_03_1404 - 29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 72.1 bits (169), Expect = 4e-13
Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Frame = -1
Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSW-ITRATVXXXXX 540
+Y+ KFQN++KE + + K+ E++K+ LT W L + + +
Sbjct: 639 DYEDKKFQNVSKEGLKLGKDSKLKDLKESFKE----LTDWWKKALDTESVDSVKISNRLS 694
Query: 539 XXXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRV 360
+GW+ NME++ S Q D ++ ++ K++LEINPRHPI+ EL +V
Sbjct: 695 DTPCVVVTSKYGWSANMEKIMQS---QTLSDASKQAYMRGKRVLEINPRHPIIKELRDKV 751
Query: 359 QXXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
A +Y+TA + SG+ L + + FA S+ +Q++L L
Sbjct: 752 AQDSESESLKQTAKLVYQTALMESGFNLPDPKD--FASSIYRSVQKSLDL 799
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 70.9 bits (166), Expect = 9e-13
Identities = 44/169 (26%), Positives = 77/169 (45%)
Frame = -1
Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXX 537
E++G K + KE +E + K++ E K+++E L + + + LG + + V
Sbjct: 254 EFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVD 313
Query: 536 XXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQ 357
+GWT NMER+ + A + D +++ KK +EINP + I+ EL +R
Sbjct: 314 SPCCLVTGEYGWTANMERIMKAQALR---DSSMAGYMSSKKTMEINPENAIMDELRKRAD 370
Query: 356 XXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
L+ TA L SG+ L++ F + ML+ L +
Sbjct: 371 ADKNDKSVKDLVMLLFETALLTSGFSLEDPNT--FGTRIHRMLKLGLSI 417
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 70.9 bits (166), Expect = 9e-13
Identities = 44/169 (26%), Positives = 77/169 (45%)
Frame = -1
Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXX 537
E++G K + KE +E + K++ E K+++E L + + + LG + + V
Sbjct: 508 EFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVD 567
Query: 536 XXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQ 357
+GWT NMER+ + A + D +++ KK +EINP + I+ EL +R
Sbjct: 568 SPCCLVTGEYGWTANMERIMKAQALR---DSSMAGYMSSKKTMEINPENAIMDELRKRAD 624
Query: 356 XXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
L+ TA L SG+ L++ F + ML+ L +
Sbjct: 625 ADKNDKSVKDLVMLLFETALLTSGFSLEDPNT--FGTRIHRMLKLGLSI 671
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 70.9 bits (166), Expect = 9e-13
Identities = 44/169 (26%), Positives = 77/169 (45%)
Frame = -1
Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXX 537
E++G K + KE +E + K++ E K+++E L + + + LG + + V
Sbjct: 508 EFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVD 567
Query: 536 XXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQ 357
+GWT NMER+ + A + D +++ KK +EINP + I+ EL +R
Sbjct: 568 SPCCLVTGEYGWTANMERIMKAQALR---DSSMAGYMSSKKTMEINPENSIMDELRKRAD 624
Query: 356 XXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
L+ TA L SG+ L++ F + ML+ L +
Sbjct: 625 ADKNDKSVKDLVMLLFETALLTSGFSLEDPNT--FGTRIHRMLKLGLSI 671
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 70.5 bits (165), Expect = 1e-12
Identities = 44/169 (26%), Positives = 76/169 (44%)
Frame = -1
Query: 716 EYDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXX 537
E++G K + KE +E + K++ E K+++E L + + + LG + + V
Sbjct: 508 EFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVD 567
Query: 536 XXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQ 357
+GWT NMER+ + A + D +++ KK +EINP + I+ EL +R
Sbjct: 568 SPCCLVTGEYGWTANMERIMKAQALR---DSSMAGYMSSKKTMEINPENAIMEELRKRAD 624
Query: 356 XXXXXXXXXXXAHTLYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 210
L+ TA L SG+ L + F + ML+ L +
Sbjct: 625 ADKNDKSVKDLVLLLFETALLTSGFSLDDPNT--FGSRIHRMLKLGLSI 671
>09_04_0497 - 18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 70.1 bits (164), Expect = 2e-12
Identities = 43/144 (29%), Positives = 63/144 (43%)
Frame = -1
Query: 713 YDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXXX 534
Y KF +I+KE D E GD ++K K++Y L W+ +LG + + +
Sbjct: 596 YKEKKFVDISKE--DLELGDEDEDKENESKQEYTLLCDWIKQQLGDKVAKVQISNRLSSS 653
Query: 533 XXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQX 354
FGW+ NMERL + Q D + +++ EINP HPIV +L +
Sbjct: 654 PCVLVSGKFGWSANMERLMKA---QTLGDTSSLEFMRGRRIFEINPDHPIVKDLSAACKN 710
Query: 353 XXXXXXXXXXAHTLYRTAALRSGY 282
LY TA + SGY
Sbjct: 711 EPESTEAKRAVELLYETALISSGY 734
>08_02_1073 - 24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 66.9 bits (156), Expect = 2e-11
Identities = 43/144 (29%), Positives = 64/144 (44%)
Frame = -1
Query: 713 YDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXXX 534
Y KF +I+KE D E GD ++ E+ K++Y L W+ +LG + + +
Sbjct: 846 YKEKKFVDISKE--DLELGDEDEDNKES-KQEYTLLCDWVKQQLGDKVAKVQISKRLSLS 902
Query: 533 XXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQX 354
FGW+ NMERL + Q D + +++ EINP HPIV +L +
Sbjct: 903 PCVLVSGKFGWSANMERLMKA---QTLGDTSSLEFMRGRRIFEINPDHPIVKDLNAACKN 959
Query: 353 XXXXXXXXXXAHTLYRTAALRSGY 282
LY TA + SGY
Sbjct: 960 EPESTEAKRAVELLYETALISSGY 983
>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 63.3 bits (147), Expect = 2e-10
Identities = 38/144 (26%), Positives = 62/144 (43%)
Frame = -1
Query: 713 YDGHKFQNIAKEIFDXEEGDRAKEKLEAYKKQYEPLTRWLGDKLGSWITRATVXXXXXXX 534
Y +F +I+KE D + GD+ +EK + K++Y W+ +LG + R +
Sbjct: 856 YKDKRFVDISKE--DLDLGDKNEEKEKEIKQEYSQTCDWIKKRLGEKVARVDISNRLSSS 913
Query: 533 XXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHPIVAELLRRVQX 354
FGW+ NMERL + Q D + +K+ EINP H I+ L +
Sbjct: 914 PCVLVAAKFGWSANMERLMRA---QSMGDMSSLDFMRSRKVFEINPEHEIIKGLNAACRA 970
Query: 353 XXXXXXXXXXAHTLYRTAALRSGY 282
L+ T+ + SG+
Sbjct: 971 NPDDPEALKAVDILFETSMISSGF 994
>06_03_0528 +
21782567-21782651,21783355-21783563,21784095-21784232,
21784520-21784734,21784813-21784967,21785010-21785071,
21785832-21785834
Length = 288
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 647 KEKLEAYKKQYEPLTRWLGDKLG-SWITRATVXXXXXXXXXXXXXXAFGWT 498
KE LEAY +Y +R LGD+L +W+ ++ + + WT
Sbjct: 222 KEVLEAYYLKYMEASRMLGDQLALAWVVKSYLPSAFSKFSKHEAFTVYNWT 272
>08_02_0012 - 11247424-11247702
Length = 92
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 693 EHRQGNIRXGGRRPR--QGEAGG 631
+ RQG R GGRRPR +G++GG
Sbjct: 10 DRRQGARRAGGRRPRAAEGDSGG 32
>07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 506 GWTGNMERLALSNAHQKADDPQRRH 432
GWT E + S + K DDP+R H
Sbjct: 938 GWTSKPEGIHQSRSTTKPDDPKRAH 962
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,565,531
Number of Sequences: 37544
Number of extensions: 101327
Number of successful extensions: 529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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