Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l21
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    26   6.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   6.0  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   8.0  

>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 246 IIRLCLKNGFFYCK*LSSRAHLIS 175
           I+ +C K GF+ C+ L S  H IS
Sbjct: 246 ILVMCAKLGFYICRLLGSPWHTIS 269


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 619 YHWLVSHKNKKITLKVHVVSIFVENLYKWT 530
           Y +L +  NKK+TL   VVS+ +E L   T
Sbjct: 839 YGFLSAFDNKKVTLPDKVVSLMIELLENLT 868


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 343 TNHKKLTKQYNRDIICTGRYR-HPPSSTT 426
           ++HK+L ++YN+ ++C   YR +PP   T
Sbjct: 114 SDHKRLPEKYNQ-MVCLEAYRKYPPVCAT 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,614
Number of Sequences: 5004
Number of extensions: 56783
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)