Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l21
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    29   3.6  
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173...    28   6.3  

>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
            14291855-14292025,14292560-14292647,14292711-14292802,
            14292920-14293384,14293860-14294633,14294890-14295087,
            14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 261  EQFCVDTINIICNISFIKLSDYTLKILYKSQEI 359
            EQ  +  +N +C + F ++SD+T  + Y  +++
Sbjct: 1161 EQAVLKAVNQVCGLEFSRISDFTKSVQYGQKQL 1193


>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
            32917396-32917552,32917695-32917753,32918180-32918291,
            32918901-32919050,32919180-32919316,32919977-32920123,
            32920197-32920298,32920674-32920731,32920840-32920941,
            32921905-32921942,32922031-32922157,32922228-32922401,
            32922542-32922628,32923838-32923947,32924654-32924714,
            32925338-32925515,32925628-32925833,32926108-32926227,
            32927202-32927423,32927708-32927847,32927976-32928087,
            32928254-32928304,32928384-32928473,32928630-32928800,
            32928897-32929049,32929860-32930036,32930131-32930268,
            32930363-32930433,32930837-32930936,32931156-32931212,
            32931301-32931357,32931451-32931531,32931614-32931696,
            32931831-32931966
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 467  CTLQLRRRSHGLRRTPEGPSASPL 538
            C LQ   RS+GL  TP G S  PL
Sbjct: 1129 CLLQKNLRSNGLFATPSGRSGGPL 1152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,834
Number of Sequences: 37544
Number of extensions: 294841
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)