Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l21
(705 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12010-1|AAA21125.1| 434|Drosophila melanogaster nemo protein. 29 6.2
U12009-1|AAA21124.1| 477|Drosophila melanogaster nemo protein. 29 6.2
AY069602-1|AAL39747.1| 414|Drosophila melanogaster LD36031p pro... 29 6.2
AE014296-1361|AAN12040.1| 200|Drosophila melanogaster CG7892-PD... 29 6.2
AE014296-1360|AAN12039.1| 414|Drosophila melanogaster CG7892-PC... 29 6.2
AE014296-1359|AAN12038.1| 414|Drosophila melanogaster CG7892-PB... 29 6.2
AE014296-1358|AAF50497.2| 414|Drosophila melanogaster CG7892-PA... 29 6.2
AE014296-1357|AAN12037.1| 430|Drosophila melanogaster CG7892-PG... 29 6.2
AE014296-1356|AAN12036.1| 430|Drosophila melanogaster CG7892-PF... 29 6.2
AE014296-1355|AAN12035.1| 430|Drosophila melanogaster CG7892-PE... 29 6.2
>U12010-1|AAA21125.1| 434|Drosophila melanogaster nemo protein.
Length = 434
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>U12009-1|AAA21124.1| 477|Drosophila melanogaster nemo protein.
Length = 477
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AY069602-1|AAL39747.1| 414|Drosophila melanogaster LD36031p
protein.
Length = 414
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AE014296-1361|AAN12040.1| 200|Drosophila melanogaster CG7892-PD,
isoform D protein.
Length = 200
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 61 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 98
>AE014296-1360|AAN12039.1| 414|Drosophila melanogaster CG7892-PC,
isoform C protein.
Length = 414
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AE014296-1359|AAN12038.1| 414|Drosophila melanogaster CG7892-PB,
isoform B protein.
Length = 414
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AE014296-1358|AAF50497.2| 414|Drosophila melanogaster CG7892-PA,
isoform A protein.
Length = 414
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AE014296-1357|AAN12037.1| 430|Drosophila melanogaster CG7892-PG,
isoform G protein.
Length = 430
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AE014296-1356|AAN12036.1| 430|Drosophila melanogaster CG7892-PF,
isoform F protein.
Length = 430
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
>AE014296-1355|AAN12035.1| 430|Drosophila melanogaster CG7892-PE,
isoform E protein.
Length = 430
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 488 RSHGLRRTPEGPSASPLI*I-FYKNRNHVHL*CYFLIF 598
R+H LRR P+ PS S L + + VHL C L+F
Sbjct: 275 RTHMLRRAPKPPSFSVLYTLSSHATHEAVHLLCQMLVF 312
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,524,292
Number of Sequences: 53049
Number of extensions: 559786
Number of successful extensions: 915
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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