Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l21
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-7|CAB03400.1|  898|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC024796-5|AAN60504.1|  353|Caenorhabditis elegans Hypothetical ...    28   7.5  

>Z81128-7|CAB03400.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.7 protein.
          Length = 898

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 168 FENV*DTWSTLNLNCLIGNDTFYKKVLL 85
           ++NV +T+ TL +N  +   TFY+ V L
Sbjct: 257 YQNVVETFDTLTMNLDVATTTFYRPVAL 284


>AC024796-5|AAN60504.1|  353|Caenorhabditis elegans Hypothetical
           protein Y48G1C.10 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = -1

Query: 210 CK*LSSRAHLISSDFE---NV*DTWSTLNLNCLIGNDT---FYKKVLLKIVSCDSYHYES 49
           C   + + H+I  D +   NV   +  L   C IG      F KK++ +I SC  +HY  
Sbjct: 247 CHPNNEKPHVIKLDVDFVSNVGKAFDNLLSLCAIGEGEHFIFKKKIIRRIFSCFIFHYFP 306

Query: 48  FSVN 37
           ++++
Sbjct: 307 YNMH 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,264
Number of Sequences: 27780
Number of extensions: 317978
Number of successful extensions: 658
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)