Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l18
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    71   2e-13
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   4.3  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.6  

>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIXFE---KVDVNGDNASPLWKYLKHKQGGTLGSF 653
           CNQF  QEPG+ EEI       K+  + F    K++VNGDN  P++++LK ++       
Sbjct: 64  CNQFGNQEPGSDEEIA--QFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQKKQLGLER 121

Query: 652 IKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 551
           IKWNF KF++N+ G  +ER+   + P  L   +E
Sbjct: 122 IKWNFEKFLVNRQGQVIERYSSISKPEHLENDIE 155


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 395 NYITLFYKYPFNDTHTDFVFRLQFAIKPITKLFLIKGYL 511
           +Y+   Y+ PF+   T  +  L+  +  + + FLIK YL
Sbjct: 812 SYLNSSYQTPFHAGETHLISSLRSKVDLLDRKFLIKEYL 850


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 386 FIQNYITLFYKYPFNDTHTDFVFRLQFAIKPITKL 490
           ++  + TLF  +PFN     F +RL  +  P T L
Sbjct: 132 YLGRFQTLFKSFPFNLISDSFSYRLNLSKLPRTPL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,898
Number of Sequences: 5004
Number of extensions: 68706
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)