Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l18
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130...   109   2e-24
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496...   108   6e-24
11_03_0111 - 10129531-10129563,10129645-10129812,10130366-101304...   107   1e-23
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433...    91   1e-18
03_03_0010 + 13712339-13712392,13712506-13712582,13712715-137127...    86   3e-17
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743...    28   7.8  

>04_04_0755 +
           27812097-27812144,27812377-27812462,27812976-27813037,
           27813256-27813374,27813511-27813678,27813766-27813798
          Length = 171

 Score =  109 bits (263), Expect = 2e-24
 Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLS-VKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
           CNQF GQEPG+ EEIV    +  K+    F+KVDVNG+NA+PL+KYLK  +GG  G  IK
Sbjct: 74  CNQFGGQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKYLKSNKGGLFGDSIK 133

Query: 646 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           WNF+KF+++K+G  V+R+ P T PL + K ++K
Sbjct: 134 WNFSKFLVDKEGRVVDRYAPTTSPLSIEKDIKK 166


>02_05_0224 +
           26948263-26948520,26948831-26948907,26949597-26949658,
           26949797-26949915,26950326-26950493,26950587-26950619
          Length = 238

 Score =  108 bits (259), Expect = 6e-24
 Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLS-VKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
           CNQF GQEPG  EEIV    +  K+    F+KVDVNGDN +P++K+LK  +GG  G  IK
Sbjct: 141 CNQFGGQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDNTAPIYKFLKSSKGGLFGDNIK 200

Query: 646 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           WNF+KF+++K+G  VER+ P T PL + K ++K
Sbjct: 201 WNFSKFLVDKEGRVVERYAPTTSPLSMEKDIKK 233


>11_03_0111 -
           10129531-10129563,10129645-10129812,10130366-10130484,
           10130589-10130650,10131043-10131119,10131659-10131838
          Length = 212

 Score =  107 bits (257), Expect = 1e-23
 Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEI---VCLPLSVKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSF 653
           CNQFAGQEPG+ EEI   VC     K+    F+K+DVNG  A+PL+K+LK ++GG LG  
Sbjct: 115 CNQFAGQEPGSNEEIEQTVCTRF--KAEFPIFDKIDVNGKEAAPLYKFLKSQKGGFLGDG 172

Query: 652 IKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           IKWNFTKF++ KDG  VER+ P T PL +   ++K
Sbjct: 173 IKWNFTKFLVGKDGKVVERYAPTTSPLKIENDIQK 207


>06_01_0600 +
           4332886-4332896,4332968-4333067,4333588-4333664,
           4333774-4333835,4334016-4334134,4334237-4334404,
           4335004-4335123
          Length = 218

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 41/87 (47%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = -2

Query: 823 CNQFAGQEPG-NPEEIVCLPLSVKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
           CNQF  QEPG NP+         K+    F+KVDVNG N +P++K+LK   GG LG  +K
Sbjct: 92  CNQFGAQEPGSNPQIKQFACTRFKAEFPIFDKVDVNGPNTAPIYKFLKSSAGGFLGDLVK 151

Query: 646 WNFTKFIINKDGVPVERHGPNTDPLDL 566
           WNF KF+++K G  VER+ P T P  +
Sbjct: 152 WNFEKFLVDKTGKVVERYPPTTSPFQI 178


>03_03_0010 +
           13712339-13712392,13712506-13712582,13712715-13712776,
           13713231-13713349,13714928-13715095,13715183-13715212
          Length = 169

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLS-VKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
           CNQF  QEPG+ ++I     +  K+    F+KV VNG +A+PL+K+LK  + G  GS IK
Sbjct: 73  CNQFLRQEPGSDQQIKDFACTRFKAEYPVFQKVRVNGPDAAPLYKFLKASKPGLFGSRIK 132

Query: 646 WNFTKFIINKDGVPVERHGPNTDPL----DLVKSLE 551
           WNFTKF+I+K+G  + R+   T PL    D++K+LE
Sbjct: 133 WNFTKFLIDKNGKVINRYSTATSPLSFEKDILKALE 168


>07_03_1027 -
           23371826-23372006,23372110-23372171,23372595-23374335,
           23374609-23374704,23374967-23375043,23376807-23377307
          Length = 885

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 809 WSRAXQSRRDSLLASERKVKFDXV*ES*CQWRQCQSTVEVFEA*ARRHPW*LHQVELYQV 630
           W+ A Q R+   +   +K       E  C W + ++ + VF A  + HPW    ++   V
Sbjct: 725 WNEAAQLRKSMRIKGMKK-------EPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNV 777

Query: 629 HHKQ 618
           + +Q
Sbjct: 778 YSEQ 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,660
Number of Sequences: 37544
Number of extensions: 361985
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)