Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l18
         (824 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011331-1|AAR96123.1|  198|Drosophila melanogaster SD18370p pro...   118   1e-26
BT003748-1|AAO41409.1|  238|Drosophila melanogaster RH61335p pro...   118   1e-26
AY061632-1|AAL29180.1|  169|Drosophila melanogaster SD10928p pro...   118   1e-26
AE014296-644|AAN11563.1|  169|Drosophila melanogaster CG12013-PB...   118   1e-26
AE014296-643|AAF47761.1|  169|Drosophila melanogaster CG12013-PA...   118   1e-26
AE014296-642|AAN11562.1|  238|Drosophila melanogaster CG12013-PD...   118   1e-26
AE014296-641|AAN11561.1|  198|Drosophila melanogaster CG12013-PC...   118   1e-26
BT022917-1|AAY55333.1|  158|Drosophila melanogaster IP04421p pro...    55   1e-07
BT022334-1|AAY54750.1|  193|Drosophila melanogaster IP04521p pro...    55   1e-07
AE013599-2807|AAF57607.2|  193|Drosophila melanogaster CG15116-P...    55   1e-07

>BT011331-1|AAR96123.1|  198|Drosophila melanogaster SD18370p
           protein.
          Length = 198

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 103 CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 162

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 163 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 196


>BT003748-1|AAO41409.1|  238|Drosophila melanogaster RH61335p
           protein.
          Length = 238

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 143 CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 202

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 203 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 236


>AY061632-1|AAL29180.1|  169|Drosophila melanogaster SD10928p
           protein.
          Length = 169

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 74  CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 133

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 134 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 167


>AE014296-644|AAN11563.1|  169|Drosophila melanogaster CG12013-PB,
           isoform B protein.
          Length = 169

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 74  CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 133

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 134 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 167


>AE014296-643|AAF47761.1|  169|Drosophila melanogaster CG12013-PA,
           isoform A protein.
          Length = 169

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 74  CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 133

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 134 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 167


>AE014296-642|AAN11562.1|  238|Drosophila melanogaster CG12013-PD,
           isoform D protein.
          Length = 238

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 143 CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 202

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 203 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 236


>AE014296-641|AAN11561.1|  198|Drosophila melanogaster CG12013-PC,
           isoform C protein.
          Length = 198

 Score =  118 bits (284), Expect = 1e-26
 Identities = 55/94 (58%), Positives = 69/94 (73%), Gaps = 2/94 (2%)
 Frame = -2

Query: 823 CNQFAGQEP-GNPEEIVCLPLSVKSN-SIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF  Q P  + E +VC     K++    F KVDVNGDNA+PL+KYLK KQ GTLGS I
Sbjct: 103 CNQFGSQMPEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGI 162

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
           KWNFTKF++NK+GVP+ R+ P TDP+D+ K +EK
Sbjct: 163 KWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEK 196


>BT022917-1|AAY55333.1|  158|Drosophila melanogaster IP04421p
           protein.
          Length = 158

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIX--FEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF GQ P +  + +   L  +  +I   F K+DV G  A PL+K L   Q       I
Sbjct: 66  CNQFGGQMPESDGQEMLDHLRREGANIGHLFAKIDVKGAQADPLYKLLTRHQHD-----I 120

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 551
           +WNF KF++++ G   +R+G   +P+ L   +E
Sbjct: 121 EWNFVKFLVDRKGNIHKRYGAELEPVALTDDIE 153


>BT022334-1|AAY54750.1|  193|Drosophila melanogaster IP04521p
           protein.
          Length = 193

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIX--FEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF GQ P +  + +   L  +  +I   F K+DV G  A PL+K L   Q       I
Sbjct: 101 CNQFGGQMPESDGQEMLDHLRREGANIGHLFAKIDVKGAQADPLYKLLTRHQHD-----I 155

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 551
           +WNF KF++++ G   +R+G   +P+ L   +E
Sbjct: 156 EWNFVKFLVDRKGNIHKRYGAELEPVALTDDIE 188


>AE013599-2807|AAF57607.2|  193|Drosophila melanogaster CG15116-PA
           protein.
          Length = 193

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
 Frame = -2

Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIX--FEKVDVNGDNASPLWKYLKHKQGGTLGSFI 650
           CNQF GQ P +  + +   L  +  +I   F K+DV G  A PL+K L   Q       I
Sbjct: 101 CNQFGGQMPESDGQEMLDHLRREGANIGHLFAKIDVKGAQADPLYKLLTRHQHD-----I 155

Query: 649 KWNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 551
           +WNF KF++++ G   +R+G   +P+ L   +E
Sbjct: 156 EWNFVKFLVDRKGNIHKRYGAELEPVALTDDIE 188


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,143,762
Number of Sequences: 53049
Number of extensions: 666088
Number of successful extensions: 1424
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)