Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l18
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81070-10|CAB03004.1| 163|Caenorhabditis elegans Hypothetical p... 99 4e-21
Z83119-3|CAB05581.1| 163|Caenorhabditis elegans Hypothetical pr... 97 1e-20
AF047660-2|AAQ01522.1| 188|Caenorhabditis elegans Hypothetical ... 78 7e-15
U51994-1|AAA96064.1| 193|Caenorhabditis elegans Hypothetical pr... 70 2e-12
AC006644-1|AAF39836.1| 145|Caenorhabditis elegans Hypothetical ... 52 7e-07
Z81015-7|CAB02659.3| 223|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z81015-1|CAB02655.1| 224|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 29 4.0
U64598-1|AAK39215.2| 330|Caenorhabditis elegans Serpentine rece... 29 4.0
AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying de... 29 4.0
Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical pr... 28 7.1
AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b prot... 28 7.1
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 28 9.3
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 28 9.3
AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z81070-10|CAB03004.1| 163|Caenorhabditis elegans Hypothetical
protein F26E4.12 protein.
Length = 163
Score = 98.7 bits (235), Expect = 4e-21
Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLS-VKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
CNQFAGQEP +I K F+K+DVNGD SPL+K+LK+++GG + IK
Sbjct: 65 CNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIK 124
Query: 646 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
WNFTKF++ +DG ++R GP TDP D+ K +++
Sbjct: 125 WNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKE 157
>Z83119-3|CAB05581.1| 163|Caenorhabditis elegans Hypothetical
protein R05H10.5 protein.
Length = 163
Score = 97.5 bits (232), Expect = 1e-20
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLS-VKSNSIXFEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
CNQF GQEP +I K F+K+DVNGDN +PL+K+LK ++GG L IK
Sbjct: 65 CNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIK 124
Query: 646 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLE 551
WNFTKF++ +DG ++R P T+P D+ K +E
Sbjct: 125 WNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIE 156
>AF047660-2|AAQ01522.1| 188|Caenorhabditis elegans Hypothetical
protein T09A12.2b protein.
Length = 188
Score = 78.2 bits (184), Expect = 7e-15
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIX-FEKVDVNGDNASPLWKYLKHKQGGTLGSFIK 647
CNQF QEP +I+ S + + + K++VNG N PLWK+LK ++G +L + I
Sbjct: 92 CNQFEKQEPETEGKILDFVKSSYTYAPDMYSKIEVNGQNTHPLWKFLKKERGSSLSADIP 151
Query: 646 WNFTKFIINKDGVPVERHGPNTDPLDLVKSLEK 548
WNF+KF+++K+G V R+ + +P+DL + + +
Sbjct: 152 WNFSKFLVDKNGHVVGRYSHSVNPIDLEEEISR 184
>U51994-1|AAA96064.1| 193|Caenorhabditis elegans Hypothetical
protein R03G5.5 protein.
Length = 193
Score = 70.1 bits (164), Expect = 2e-12
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIXFEKVDVNGD----NASPLWKYLKHKQGGTLGS 656
CNQF G + + + V S + + + KV VNG PLW +LK +QGGTL
Sbjct: 94 CNQF-GFQACDINKFVNEKFSFEPD--LYGKVTVNGGPLIGEEEPLWTFLKKEQGGTLFD 150
Query: 655 FIKWNFTKFIINKDGVPVERHGPNTDPLDLVKSLEKYW*KILAQTK 518
IKWNFTKF++N+ G V R GP+T+P KS E+ K+L + K
Sbjct: 151 AIKWNFTKFLVNRQGKVVARFGPSTNP----KSFEEEIVKLLDENK 192
>AC006644-1|AAF39836.1| 145|Caenorhabditis elegans Hypothetical
protein F55A3.5 protein.
Length = 145
Score = 51.6 bits (118), Expect = 7e-07
Identities = 34/92 (36%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNSIXFEKVDVNGDNASPLWKYLKH-------KQGGT 665
CNQ +E + LP K ++K+DVNG N PL+K LK G
Sbjct: 38 CNQSNNEESSWESD---LPYFFKYQPKIYQKIDVNGVNTDPLYKLLKKVNVVTLGDSIGI 94
Query: 664 LGSFIKWNFTKFIINKDGVPVERHGPNTDPLD 569
LG I +NFTKF + KDG ++R T P D
Sbjct: 95 LGDSICYNFTKFFVGKDGHVIKRFCRTTLPKD 126
>Z81015-7|CAB02659.3| 223|Caenorhabditis elegans Hypothetical
protein C11E4.1 protein.
Length = 223
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLSVK--------SNSIXFEKVDVNGDNASPLWKYLKH---- 680
CNQF QEP E++ + V+ N + K+D NGDN P+++++K
Sbjct: 100 CNQFYLQEPAENHELMNGIMYVRPGNGWKPHQNLHIYGKLDTNGDNQHPIYEFVKESCPQ 159
Query: 679 ---KQGGT--------LGSFIKWNFTKFIINKDGVPVERHGP 587
K G T S I WNF KF+I+++G P R P
Sbjct: 160 TVDKIGKTDELMYNPIRASDITWNFEKFLIDRNGQPRFRFHP 201
>Z81015-1|CAB02655.1| 224|Caenorhabditis elegans Hypothetical
protein C11E4.2 protein.
Length = 224
Score = 40.3 bits (90), Expect = 0.002
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Frame = -2
Query: 823 CNQFAGQEPGNPEEIVCLPLSVKSNS--------IXFEKVDVNGDNASPLWKYLKH---- 680
CNQF QEP E++ V+ + + K+DVNGDN PL++++K
Sbjct: 101 CNQFYLQEPAENHELMNGLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQ 160
Query: 679 ---KQGGT--------LGSFIKWNFTKFIINKDGVPVERHGP 587
K G T S I WNF KF+I+++G P R P
Sbjct: 161 TVDKIGKTDELMYNPVRPSDITWNFEKFLIDRNGQPRFRFHP 202
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
protein F47A4.2 protein.
Length = 3498
Score = 29.9 bits (64), Expect = 2.3
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +2
Query: 227 KLLCIYVFRKTGDIKTRRIFKCSALYMLV----NIIQLKLRHFKIAKNSGYTRNVSTFIQ 394
KLLCI F + + + + + L + I L + +K +N R +T
Sbjct: 158 KLLCILGFNSSSKTQKKTLLDVATLELSQACNKTTIWLVTQLYKSFRNP-IKRREATKTW 216
Query: 395 NYITLFYKYPFNDTHTDFVFRLQFAIKPITKLFLIKGY 508
NY+T F KY F+D D L + +LFL K +
Sbjct: 217 NYLTGFMKYMFDDGVLDKQEFLNDLTEVFNQLFLQKNF 254
>Z73971-9|CAH04730.1| 522|Caenorhabditis elegans Hypothetical
protein C50H2.2a protein.
Length = 522
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +2
Query: 203 LKSI*FL*KLLCIYVFRKTGDIKTRRIFKCSALYMLVNIIQLKLRHFKIAKNSGYTRNVS 382
L+SI FL +LL I F T D K+RR ++ L+ L + + +A N
Sbjct: 110 LRSILFLFRLLAI--FPATTDRKSRRKRNHRSIIKLI----LYVNYIVLA----VLLNSF 159
Query: 383 TFIQNY-ITLFYKYPFNDTHTDFVFRLQFAIKPITKLFLI 499
N+ + + YK+ F HT V + A KP+ +F+I
Sbjct: 160 LIKMNFKVLMLYKHKFGLMHTGTVASMITATKPVINVFVI 199
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +2
Query: 203 LKSI*FL*KLLCIYVFRKTGDIKTRRIFKCSALYMLVNIIQLKLRHFKIAKNSGYTRNVS 382
L+SI FL +LL I F T D K+RR ++ L+ L + + +A N
Sbjct: 76 LRSILFLFRLLAI--FPATTDRKSRRKRNHRSIIKLI----LYVNYIVLA----VLLNSF 125
Query: 383 TFIQNY-ITLFYKYPFNDTHTDFVFRLQFAIKPITKLFLI 499
N+ + + YK+ F HT V + A KP+ +F+I
Sbjct: 126 LIKMNFKVLMLYKHKFGLMHTGTVASMITATKPVINVFVI 165
>U64598-1|AAK39215.2| 330|Caenorhabditis elegans Serpentine
receptor, class v protein6 protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 245 VFRKTGDIKTRRIFKCSALYMLVNIIQLKLRHFKIAKNSGYTRNV-STFIQNY--ITLFY 415
VF+KTG R +F S L V ++ L ++ KI + G N+ S + +Y + L Y
Sbjct: 216 VFKKTGATAERSLFISSFLSFCVLMLNLTVQILKICISLGGMTNIFSVYDVSYPMVDLMY 275
Query: 416 K-YPFNDTHTDFVFRLQ 463
YP+ T V R Q
Sbjct: 276 SHYPWVLLVTSSVLRRQ 292
>AY532645-1|AAS21318.1| 522|Caenorhabditis elegans egg laying
defective EGL-47A protein.
Length = 522
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +2
Query: 203 LKSI*FL*KLLCIYVFRKTGDIKTRRIFKCSALYMLVNIIQLKLRHFKIAKNSGYTRNVS 382
L+SI FL +LL I F T D K+RR ++ L+ L + + +A N
Sbjct: 110 LRSILFLFRLLAI--FPATTDRKSRRKRNHRSIIKLI----LYVNYIVLA----VLLNSF 159
Query: 383 TFIQNY-ITLFYKYPFNDTHTDFVFRLQFAIKPITKLFLI 499
N+ + + YK+ F HT V + A KP+ +F+I
Sbjct: 160 LIKMNFKVLMLYKHKFGLMHTGTVASMITATKPVINVFVI 199
>Z81522-2|CAB04238.1| 415|Caenorhabditis elegans Hypothetical
protein F32B4.1 protein.
Length = 415
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 299 LYMLVNIIQLKLRHFKIAKNSGYTRNVSTF 388
L L N L++RHF K GY RN+ ++
Sbjct: 159 LKALENSCILEIRHFNFTKYPGYVRNLKSY 188
>AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b protein
2.2 protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +3
Query: 72 THHLFIFIS*T*NIVLKNILIKSAYYLFXXXXXXXXXXXXRLFL*NQYDFYRSCSVFMYS 251
T HL IF+ I++KNI+ K+ + L ++L + + Y + +S
Sbjct: 105 TLHLTIFV--LDRIIVKNIVSKAEFQLLGVAALFVASKFEDIYLPDILE-YELITENTFS 161
Query: 252 EKQVI*KQEEYLNAVHF 302
+KQ++ ++ LNA++F
Sbjct: 162 KKQILAMEQTILNALNF 178
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
protein C23F12.1a protein.
Length = 2329
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 635 GKVPLDEATKGASLLMLQILPQWTGIVSIDINF 733
GKVP + +GA ++ +PQ G ID+ F
Sbjct: 159 GKVPNNVQMQGAGRCLVTFIPQHAGTYVIDVTF 191
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
protein C23F12.1b protein.
Length = 2747
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 635 GKVPLDEATKGASLLMLQILPQWTGIVSIDINF 733
GKVP + +GA ++ +PQ G ID+ F
Sbjct: 159 GKVPNNVQMQGAGRCLVTFIPQHAGTYVIDVTF 191
>AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical
protein Y43E12A.1 protein.
Length = 317
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +3
Query: 72 THHLFIFIS*T*NIVLKNILIKSAYYLFXXXXXXXXXXXXRLFL*NQYDFYRSCSVFMYS 251
T HL IF+ I++KNI+ K+ + L ++L + + Y + +S
Sbjct: 83 TLHLTIFV--LDRIIVKNIVSKAEFQLLGVAALFVASKFEDIYLPDILE-YEMITDNTFS 139
Query: 252 EKQVI*KQEEYLNAVHF 302
+KQ++ ++ LNA++F
Sbjct: 140 KKQIMAMEQTILNALNF 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,879,001
Number of Sequences: 27780
Number of extensions: 376108
Number of successful extensions: 853
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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