Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l11
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    27   0.38 
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   1.2  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   1.2  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   2.0  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    23   4.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   4.7  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    23   8.2  

>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 135 YANLEMQIEEEIKYMEIDDGEEIDTVKTFLRN 40
           YA   ++ EE +K  +I DG  I  VKT  +N
Sbjct: 48  YAGRVLKDEESLKTYKIQDGHSIHLVKTLGQN 79


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 102 FLPQFAFPSLRILANNNLVVGRPRQF 179
           FL   +FP++ +      V+ RP QF
Sbjct: 262 FLKYVSFPAMELRGETEFVIDRPEQF 287


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = -2

Query: 228 ERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVK 55
           E ++  W    D  + K+ +   RLN +  EY   E Q+  E+    +D+   ++ ++
Sbjct: 272 EESLKVWARFRDLSITKLKDTYDRLNIHYDEYDG-ESQVSLELMNKMVDELRSLNLIE 328


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 165 AQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEI 67
           A+ LN YL+ YA L  ++ +  K++     EE+
Sbjct: 105 ARFLNEYLEYYARLLAEVVDATKFLPFQLTEEV 137


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -2

Query: 171 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSM 34
           E    L Y ++E  +L   ++   KY+ +  G+ +D +   L NS+
Sbjct: 488 ESINHLVYLMEEVFHLTDHLKAIKKYLLLGQGDFVDLLMESLGNSL 533


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 129  NLEMQIEEEIKYMEIDDGEEIDTVKTFLRN 40
            +L++Q+  E+K M++    ++DT K+  R+
Sbjct: 1215 SLKIQLLSELKDMKLLGASDVDTCKSLKRS 1244


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 231 IERTVTR-WHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIE 109
           +E  + R W L S +  L       RL   L++  NLE  +E
Sbjct: 295 VESDIQRAWDLYSSSANLGYTRSLYRLGVLLEDQGNLEEAVE 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 988,250
Number of Sequences: 5004
Number of extensions: 15795
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)