Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l11
(253 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416 29 0.52
01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779... 28 0.91
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 27 1.6
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 27 2.8
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183... 27 2.8
11_06_0235 + 21588212-21589029,21589426-21591358 26 3.7
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 26 3.7
01_06_0564 - 30271749-30271759,30271847-30271922,30272878-302729... 26 3.7
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 4.8
03_02_0879 + 12097602-12098120,12099215-12099254,12099550-120996... 26 4.8
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 25 6.4
07_01_0413 - 3155080-3155274,3155628-3155933,3156062-3156163,315... 25 6.4
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 25 8.4
>01_06_0402 - 29044205-29044540,29044626-29044898,29044982-29045416
Length = 347
Score = 29.1 bits (62), Expect = 0.52
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = -2
Query: 225 RTVTRWHLLSDNV--LLKIGEVAQ-RLNYY-LQEYANLEMQIEEEIKYMEIDDGEEIDTV 58
RT W LLS++ L+ G V + +++ Y + YA +IEEE++ + +D V
Sbjct: 218 RTTFLWELLSESFASLVAQGLVEEDKVDAYNVPFYAPSIGEIEEEVRR---EGSFRMDYV 274
Query: 57 KTFLRNSMSSGGXRRD 10
+T+ N SSG RRD
Sbjct: 275 QTYEINLSSSGDARRD 290
>01_06_0671 -
31076463-31076610,31077060-31077202,31077758-31077963,
31078119-31078644,31078753-31078854,31079572-31079637,
31079710-31079822,31080260-31080345,31081007-31081146
Length = 509
Score = 28.3 bits (60), Expect = 0.91
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 168 VAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDT--VKTFLRNSMSSGGXR 16
+ +R +++ L+M EE++ E+DD + V TFLRN+ GG R
Sbjct: 7 ILERERRQVEQILELDM---EELQVEEVDDAGSSSSSEVDTFLRNTHGDGGSR 56
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 87 IDDGEEIDTVKTFLRNSMSSGG 22
IDD + +DTVK LR+ + GG
Sbjct: 214 IDDQDRLDTVKRLLRHLLRGGG 235
>04_04_0447 -
25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 231 IERTVTRWHLLSDNVLLKIGEVAQRLNYYLQEYANL 124
+E +TR+H DN K+ E+ + L+ LQ+ N+
Sbjct: 717 VENALTRYHEACDNAKRKVLELLRGLSSELQDKINV 752
>02_05_0566 -
30017031-30017309,30018077-30018172,30018261-30018377,
30018538-30018667,30018866-30019029,30019480-30019485
Length = 263
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Frame = -2
Query: 240 ARMIERTVTRWHLLSDNVLLK-------IGEVAQRLNYYLQEYANLEMQIEEE 103
+R+ + + RW + DN L+K G+V Q ++ LQ + EM++E E
Sbjct: 206 SRVGDMQIGRWFMTKDNALVKDSTVNVVSGKVKQEVHLKLQNVESGEMELELE 258
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 177 IGEVAQRLNYYLQEYANLEMQIEEEIKYMEID 82
IG + +L L E NL+ ++E IK+++I+
Sbjct: 8 IGTLLPKLGKLLSEEYNLQKNVKEGIKFLKIE 39
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 211 LAFIVG*CIIKNWRGRPTTKLLFARIRKL 125
+A + G C++ W+G PTT L+ + K+
Sbjct: 203 IALVCGNCVV--WKGAPTTPLITIAMTKI 229
>01_06_0564 -
30271749-30271759,30271847-30271922,30272878-30272919,
30273065-30273206,30273278-30273339,30273460-30273526,
30273644-30273834
Length = 196
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 171 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 70
++ Q L++ ++ +E+++++M +DDGEE
Sbjct: 83 DIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEE 116
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 219 VTRWHLLSDNVLLKIGEVAQRLNYYLQEYANLEMQIEEEI 100
+ R + LSD V++ G + YY++ + N +++IEE++
Sbjct: 122 IVRENELSDKVIVLHGRIEY---YYIRIFENQDVEIEEKV 158
>03_02_0879 +
12097602-12098120,12099215-12099254,12099550-12099601,
12099946-12100008,12100079-12100148,12100452-12100778
Length = 356
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -2
Query: 171 EVAQRLNYYLQEYANLEMQIEEEIKYME 88
EV +RL+ L+ L+++IEE+ KY++
Sbjct: 238 EVQKRLHEQLEIQRKLQLRIEEQGKYLQ 265
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 180 KIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSSG 25
K E+ +LN N E+++ EEIK+ E ID TF + + G
Sbjct: 684 KPSEILTKLNEMAGFAPNEEIELYEEIKFEPNVMCEHIDKKLTFRSSQLEDG 735
>07_01_0413 -
3155080-3155274,3155628-3155933,3156062-3156163,
3156262-3156705
Length = 348
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 189 VLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEE 70
+LL + + +EYAN E + EE E +DGEE
Sbjct: 53 ILLPLAAAGGEFSSEEEEYANEEEEEGEEYVEEEEEDGEE 92
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -2
Query: 156 LNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVK 55
+N +L Y+N E+ + + +I+DG+ +T +
Sbjct: 126 INMFLSGYSNAEVNADISLGDSQINDGDSSETAE 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,286,454
Number of Sequences: 37544
Number of extensions: 96507
Number of successful extensions: 309
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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