Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l11
         (253 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069538-1|AAL39683.1|  562|Drosophila melanogaster LD26135p pro...    29   1.1  
AE014298-875|AAF46151.1|  562|Drosophila melanogaster CG12219-PA...    29   1.1  
AY069431-1|AAL39576.1|  417|Drosophila melanogaster LD14015p pro...    27   2.6  
AE014296-1155|AAF50644.1|  417|Drosophila melanogaster CG10103-P...    27   2.6  
BT003482-1|AAO39485.1|  537|Drosophila melanogaster RE55639p pro...    27   4.6  
AE014298-978|AAF46222.2|  537|Drosophila melanogaster CG32732-PA...    27   4.6  
AE014134-2436|AAN10860.1|  424|Drosophila melanogaster CG31765-P...    26   6.0  

>AY069538-1|AAL39683.1|  562|Drosophila melanogaster LD26135p
           protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 176 LARSPND*IIICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRLFCAIPC 33
           L  S +D I  C  T+    +L    N WKL+  K++TL   F AI C
Sbjct: 54  LCLSRDDAISTCICTECCS-QLESFHNFWKLVELKQTTLCSQFLAIDC 100


>AE014298-875|AAF46151.1|  562|Drosophila melanogaster CG12219-PA
           protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 176 LARSPND*IIICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRLFCAIPC 33
           L  S +D I  C  T+    +L    N WKL+  K++TL   F AI C
Sbjct: 54  LCLSRDDAISTCICTECCS-QLESFHNFWKLVELKQTTLCSQFLAIDC 100


>AY069431-1|AAL39576.1|  417|Drosophila melanogaster LD14015p
           protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 225 RTVTRWHLLSDNVLLKIG-EVAQRL---NYYLQEYANLEMQIEEEIKYMEIDDGEEIDTV 58
           RT T  H +S+ ++ K+  +   +L   NY +    N  ++ E + + M+ D  ++   +
Sbjct: 137 RTATGEHYVSEKLMHKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLI 196

Query: 57  KTFLRNSMSSGG 22
               RN++S GG
Sbjct: 197 DLSDRNNLSGGG 208


>AE014296-1155|AAF50644.1|  417|Drosophila melanogaster CG10103-PA
           protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -2

Query: 225 RTVTRWHLLSDNVLLKIG-EVAQRL---NYYLQEYANLEMQIEEEIKYMEIDDGEEIDTV 58
           RT T  H +S+ ++ K+  +   +L   NY +    N  ++ E + + M+ D  ++   +
Sbjct: 137 RTATGEHYVSEKLMHKLTLQAPPKLLVENYLIAIAKNYNIEYEPDPQVMQEDQPQQPHLI 196

Query: 57  KTFLRNSMSSGG 22
               RN++S GG
Sbjct: 197 DLSDRNNLSGGG 208


>BT003482-1|AAO39485.1|  537|Drosophila melanogaster RE55639p
           protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 129 NLEMQIEEEIKYMEIDDGEEID 64
           N EM   +E+K +E+ DG+EI+
Sbjct: 489 NKEMHEADEVKELELKDGQEIE 510


>AE014298-978|AAF46222.2|  537|Drosophila melanogaster CG32732-PA
           protein.
          Length = 537

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 129 NLEMQIEEEIKYMEIDDGEEID 64
           N EM   +E+K +E+ DG+EI+
Sbjct: 489 NKEMHEADEVKELELKDGQEIE 510


>AE014134-2436|AAN10860.1|  424|Drosophila melanogaster CG31765-PA
           protein.
          Length = 424

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 50  FCAIPCPAAEXGVIC 6
           FC +PCP    G++C
Sbjct: 58  FCELPCPQGTYGIMC 72


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,884
Number of Sequences: 53049
Number of extensions: 165811
Number of successful extensions: 521
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 24,988,368
effective HSP length: 63
effective length of database: 21,646,281
effective search space used: 432925620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)