Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc16l11
(253 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY028167-1|AAK19023.1| 287|Caenorhabditis elegans EFL-2 protein. 27 1.3
AL117203-17|CAN86629.1| 284|Caenorhabditis elegans Hypothetical... 27 1.3
Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical p... 27 1.8
AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical ... 27 1.8
AL023834-4|CAB76747.1| 99|Caenorhabditis elegans Hypothetical ... 26 4.1
AL021386-4|CAB76716.1| 99|Caenorhabditis elegans Hypothetical ... 26 4.1
Z81542-11|CAB04421.1| 243|Caenorhabditis elegans Hypothetical p... 25 5.4
Z81496-12|CAB04074.1| 243|Caenorhabditis elegans Hypothetical p... 25 5.4
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 25 5.4
AC084155-6|AAK84607.1| 609|Caenorhabditis elegans Hypothetical ... 25 5.4
Z81134-9|CAB03452.1| 559|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z75526-3|CAA99769.1| 578|Caenorhabditis elegans Hypothetical pr... 25 7.1
U12762-1|AAA62207.1| 558|Caenorhabditis elegans prolyl 4-hydrox... 25 7.1
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 25 7.1
AL031635-12|CAA21045.1| 559|Caenorhabditis elegans Hypothetical... 25 7.1
AJ270999-1|CAB71298.1| 559|Caenorhabditis elegans prolyl 4-hydr... 25 7.1
AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical... 25 7.1
AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical... 25 7.1
Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z81479-4|CAB03939.1| 116|Caenorhabditis elegans Hypothetical pr... 25 9.4
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 25 9.4
AF003139-10|AAB54160.3| 294|Caenorhabditis elegans Hypothetical... 25 9.4
>AY028167-1|AAK19023.1| 287|Caenorhabditis elegans EFL-2 protein.
Length = 287
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 171 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSS 28
E ++ L L E I K++++++ EEIDT RNS +S
Sbjct: 237 ETSEALRVTLAEMLTDPTTISSSPKHIKLEEPEEIDTEDLGARNSQNS 284
>AL117203-17|CAN86629.1| 284|Caenorhabditis elegans Hypothetical
protein Y48C3A.17b protein.
Length = 284
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 171 EVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSS 28
E ++ L L E I K++++++ EEIDT RNS +S
Sbjct: 234 ETSEALRVTLAEMLTDPTTISSSPKHIKLEEPEEIDTEDLGARNSQNS 281
>Z68337-10|CAA92753.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 149 IICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRL 51
+ C +T W +KKLN WKL K S+L
Sbjct: 8 VTCLDTGFWNEVNKKKLNDWKLDETPKCISSQL 40
>AL032641-8|CAA21650.1| 647|Caenorhabditis elegans Hypothetical
protein M7.5 protein.
Length = 647
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 149 IICKNTQTWKCKLRKKLNIWKLMTAKKSTLSRL 51
+ C +T W +KKLN WKL K S+L
Sbjct: 8 VTCLDTGFWNEVNKKKLNDWKLDETPKCISSQL 40
>AL023834-4|CAB76747.1| 99|Caenorhabditis elegans Hypothetical
protein Y32B12A.5 protein.
Length = 99
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 126 LEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSSGGXRRDL 7
L++ EE+ K E + G + +T+K S++ GG RD+
Sbjct: 11 LQLVSEEDRKQFE-NHGSDHETIKAMTARSVACGGLIRDV 49
>AL021386-4|CAB76716.1| 99|Caenorhabditis elegans Hypothetical
protein Y32B12A.5 protein.
Length = 99
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 126 LEMQIEEEIKYMEIDDGEEIDTVKTFLRNSMSSGGXRRDL 7
L++ EE+ K E + G + +T+K S++ GG RD+
Sbjct: 11 LQLVSEEDRKQFE-NHGSDHETIKAMTARSVACGGLIRDV 49
>Z81542-11|CAB04421.1| 243|Caenorhabditis elegans Hypothetical
protein F09C6.3 protein.
Length = 243
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 114 FAFPSLRILANNNLVVGRPRQFLIIHYPTINANE 215
F++ S + +NN + RQ H+PT N ++
Sbjct: 60 FSYDSKTTINSNNTTIDNKRQRTTQHFPTSNPSD 93
>Z81496-12|CAB04074.1| 243|Caenorhabditis elegans Hypothetical
protein F09C6.3 protein.
Length = 243
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 114 FAFPSLRILANNNLVVGRPRQFLIIHYPTINANE 215
F++ S + +NN + RQ H+PT N ++
Sbjct: 60 FSYDSKTTINSNNTTIDNKRQRTTQHFPTSNPSD 93
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 81 HQFPYI*FLPQFAFPSLRILANNNLVVGRPRQFLIIHYP 197
H+ ++ F P F + NN V FL+IH+P
Sbjct: 251 HKMIFLLFSPNFHQSIFMLSTQNNCVEKFSSLFLLIHFP 289
>AC084155-6|AAK84607.1| 609|Caenorhabditis elegans Hypothetical
protein Y45G5AM.8 protein.
Length = 609
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 161 WATSPIFNNTLSDNKCQRVTVRSIILALFN 250
W + P ++N +S+N +T+R+ I+ N
Sbjct: 510 WNSKPTWSNPISENIADALTIRANIIHKLN 539
>Z81134-9|CAB03452.1| 559|Caenorhabditis elegans Hypothetical
protein Y47D3B.10 protein.
Length = 559
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 225 RTVTRWHLLSDNVLLKI--GEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEID 64
+ VT + +S + LK G+V + +N + NLEM+ EE++ G D
Sbjct: 365 KLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYD 420
>Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical
protein F08H9.1 protein.
Length = 607
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 161 WATSPIFNNTLSDNKCQRVTVRSIIL 238
W + P ++NT S+N +T+R I+
Sbjct: 508 WNSKPTWSNTSSENIADALTIRGNII 533
>Z75526-3|CAA99769.1| 578|Caenorhabditis elegans Hypothetical
protein C06H2.3 protein.
Length = 578
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 150 YYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLRNS 37
+ LQE + +E KY + + +++ T K F+RNS
Sbjct: 392 FLLQELHSRTFPVEIGTKYSDENWSQKLMTFKEFIRNS 429
>U12762-1|AAA62207.1| 558|Caenorhabditis elegans prolyl
4-hydroxylase alpha subunit protein.
Length = 558
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 225 RTVTRWHLLSDNVLLKI--GEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEID 64
+ VT + +S + LK G+V + +N + NLEM+ EE++ G D
Sbjct: 364 KLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYD 419
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 144 LQEYANLEMQIEEEIKYMEIDDGEEI 67
++E N ++++EEEI+ MEI + E +
Sbjct: 830 IEELENEKLKLEEEIQEMEIKNEEAL 855
>AL031635-12|CAA21045.1| 559|Caenorhabditis elegans Hypothetical
protein Y47D3B.10 protein.
Length = 559
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 225 RTVTRWHLLSDNVLLKI--GEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEID 64
+ VT + +S + LK G+V + +N + NLEM+ EE++ G D
Sbjct: 365 KLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYD 420
>AJ270999-1|CAB71298.1| 559|Caenorhabditis elegans prolyl
4-hydroxylase alpha subunit1 protein.
Length = 559
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 225 RTVTRWHLLSDNVLLKI--GEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDGEEID 64
+ VT + +S + LK G+V + +N + NLEM+ EE++ G D
Sbjct: 365 KLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYD 420
>AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical
protein Y69A2AR.13 protein.
Length = 207
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 3 RTNHAXFRRWTWNCAKKS 56
+ +HA ++W W C KS
Sbjct: 130 KLHHAEIKKWIWACVVKS 147
>AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical
protein Y69A2AR.25 protein.
Length = 337
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 3 RTNHAXFRRWTWNCAKKS 56
+ +HA ++W W C KS
Sbjct: 200 KLHHAEIKKWIWACVVKS 217
>Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical
protein F33H2.2 protein.
Length = 816
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +2
Query: 173 PIFNNTLSDNKCQRVTVRSII 235
P+FN+ L++ C+R+ R I+
Sbjct: 727 PLFNSVLNETICKRILGRGIL 747
>Z81479-4|CAB03939.1| 116|Caenorhabditis elegans Hypothetical
protein C34F6.5 protein.
Length = 116
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 144 LQEYANLEMQIEEEIKYMEIDDGEEID 64
+++ LE +EE I E+DD EE D
Sbjct: 49 VEQGVQLEQDLEEIIDIHEVDDEEEED 75
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -2
Query: 195 DNVLLKIGEVAQRLNYYLQEYANLEMQIEEEIKYMEIDDG 76
D+ +L EVA + +Y+++ +IEE+ + E++ G
Sbjct: 442 DSYILTESEVAIKTDYWMKANGEAMKEIEEKKRERELNGG 481
>AF003139-10|AAB54160.3| 294|Caenorhabditis elegans Hypothetical
protein F53G12.4 protein.
Length = 294
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 111 EEEIKYMEIDDGEEIDTVKTFLRNSMSSGG 22
+E ++ + + +GE ID ++ F +SSGG
Sbjct: 260 QELVEPLVLSEGESIDELEDFDTGLLSSGG 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,555,016
Number of Sequences: 27780
Number of extensions: 90391
Number of successful extensions: 329
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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