Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l11
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   4.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   4.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   9.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 161 WATSPIFNNTLSDNK 205
           W+T PI + T SDN+
Sbjct: 93  WSTLPIEDLTKSDNE 107


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 161 WATSPIFNNTLSDNK 205
           W+T PI + T SDN+
Sbjct: 131 WSTLPIEDLTKSDNE 145


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 215 LVGIYCRIMYY 183
           ++GIYCR+  Y
Sbjct: 208 MLGIYCRLYCY 218


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 183 IIHYPTINANELLCVLSSWHFLM 251
           ++H  T + +E   VL SW  LM
Sbjct: 253 LVHLYTRDQSETYDVLRSWRNLM 275


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 129 LRILANNNLVVGRPRQFLIIHYPTINANELLC 224
           ++IL N   ++  P + +  HYPT   N L+C
Sbjct: 778 VQILINGVWMIIDPAKAMH-HYPTREDNLLVC 808


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 117 QIEEEIKYMEIDDGEEIDT 61
           ++ E+ K  EID+G+E  T
Sbjct: 209 KVPEKKKEDEIDEGKESKT 227


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 126 SLRILANNNLVVGRPRQFLIIHYPTIN 206
           + R L  NN +  R  +F++    T+N
Sbjct: 370 TFRCLEENNKIDSRVTRFVVAVGATVN 396



 Score = 19.0 bits (37), Expect = 9.6
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 250 IKKCQDDRTHS 218
           ++ CQ D TH+
Sbjct: 522 LESCQQDETHA 532


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 156 LNYYLQEYANLEMQIEEEIKYMEIDDGEEIDTVKTFLR 43
           LN  +   A   M  EE      +   E  DT+ TFLR
Sbjct: 41  LNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDTFLR 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,380
Number of Sequences: 438
Number of extensions: 1108
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)