Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l09
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    24   3.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        23   4.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    23   4.2  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    23   7.3  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 112 MASSLQSKWICLRLNDAIIK 53
           +  +LQ    C+RLNDA+I+
Sbjct: 429 LIQALQKLQTCMRLNDALIE 448


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -1

Query: 127  PFLHIMASSLQSKWICLRLNDAIIKATC 44
            P L  + + +  KW C+ + D     TC
Sbjct: 1857 PVLESVITCINKKWPCILVGDTATGKTC 1884


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 8   VFEVCATRLKRETCRFNDGVVKAQTDPFALKRG 106
           V+E   +R KR+  R N+ + + QT    +K G
Sbjct: 515 VYEDSNSRNKRDLLRINNEIYEVQTRDLLVKDG 547


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 62  GVVKAQTDPFALKRGGHN 115
           G+     DP  +KR GHN
Sbjct: 237 GLKPTSVDPSTVKRAGHN 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,256
Number of Sequences: 5004
Number of extensions: 7295
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)