Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l09
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0058 - 6423776-6423850,6424302-6424379,6426096-6426156,642...    26   3.7  
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644...    25   6.4  

>02_02_0058 -
           6423776-6423850,6424302-6424379,6426096-6426156,
           6426239-6426330,6426440-6426670,6427510-6427950,
           6429037-6429591
          Length = 510

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 140 RRNWSIFAHYGLLASKQMDLFAP 72
           R   ++ AHYGLLA  +M++  P
Sbjct: 51  RMTHALLAHYGLLAPAKMEVLRP 73


>02_02_0060 +
           6446317-6446871,6447836-6448276,6449035-6449265,
           6449382-6449473,6449555-6449615,6451541-6451618,
           6451853-6452014
          Length = 539

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 140 RRNWSIFAHYGLLASKQMDLFAP 72
           R   ++ AHYGLLA  +M +  P
Sbjct: 51  RMTHALLAHYGLLAPAKMQVLRP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,928,225
Number of Sequences: 37544
Number of extensions: 49975
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)