Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l09
         (142 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D15049-1|BAA03645.2| 1117|Homo sapiens protein tyrosine phosphat...    27   8.1  
BC111716-1|AAI11717.1| 1115|Homo sapiens protein tyrosine phosph...    27   8.1  
AK124011-1|BAC85751.1|  120|Homo sapiens svirus entry mediator) ...    27   8.1  
AF275150-1|AAF91411.1| 1115|Homo sapiens transmembrane-type prot...    27   8.1  

>D15049-1|BAA03645.2| 1117|Homo sapiens protein tyrosine phosphatase
           precursor protein.
          Length = 1117

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 129 VHFCTLWPPRFKANGSVCALTTPSLKRHVSRFKRVAQTSNTLA 1
           ++ C++W  +   N SV  +TT +    V   +  AQT++++A
Sbjct: 94  LYTCSVWVEKDGVNSSVGTVTTATAPNPVRNLRVEAQTNSSIA 136


>BC111716-1|AAI11717.1| 1115|Homo sapiens protein tyrosine
           phosphatase, receptor type, H, precursor protein.
          Length = 1115

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 129 VHFCTLWPPRFKANGSVCALTTPSLKRHVSRFKRVAQTSNTLA 1
           ++ C++W  +   N SV  +TT +    V   +  AQT++++A
Sbjct: 94  LYTCSVWVEKDGVNSSVGTVTTATAPNPVRNLRVEAQTNSSIA 136


>AK124011-1|BAC85751.1|  120|Homo sapiens svirus entry mediator)
           (TNFRSF14).  protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 133 TGPFLHIMASSLQSKWICLRLNDAI 59
           TGPF+H    SL+ K +C  L D++
Sbjct: 96  TGPFMHRSKGSLRPKALCTTLCDSL 120


>AF275150-1|AAF91411.1| 1115|Homo sapiens transmembrane-type protein
           tyrosine phosphatase H protein.
          Length = 1115

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 129 VHFCTLWPPRFKANGSVCALTTPSLKRHVSRFKRVAQTSNTLA 1
           ++ C++W  +   N SV  +TT +    V   +  AQT++++A
Sbjct: 94  LYTCSVWVEKDGVNSSVGTVTTATAPNPVRNLRVEAQTNSSIA 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,036
Number of Sequences: 237096
Number of extensions: 245526
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 76,859,062
effective HSP length: 27
effective length of database: 70,457,470
effective search space used: 1338691930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)