Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l09
         (142 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   4.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   4.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          19   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   7.2  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 53  FNDGVVKAQTDPFALKRGGHNVQKWTS 133
           F  GV +    P+ ++RG    Q W++
Sbjct: 885 FGQGV-QGMNVPYGMQRGQSGGQTWSN 910


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -1

Query: 142 EGVTGPFLHIMASSLQSKWICLRLNDAI 59
           +GV     H   S  +++++C+   +AI
Sbjct: 175 DGVNDVVQHQSGSEAEAEFVCIATPEAI 202


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 123 FCTLWPPRFKANGSVCALTTPSLKRHVSRFK---RVAQTSNTL 4
           +CT    +  AN          LKRH+++ K   RVA+  + L
Sbjct: 3   YCTCEKCKITANRQQVMRQNMKLKRHLAQDKVKVRVAEEVDPL 45


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 57  LKRHVSRFKRVAQT 16
           LKRH  R+KR   T
Sbjct: 152 LKRHHPRYKRPRTT 165


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 47  CRFNDGVVKAQTDP 88
           CR + G  +A+ DP
Sbjct: 296 CRCDPGYFRAEKDP 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,793
Number of Sequences: 438
Number of extensions: 544
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)