Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l07
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   1.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    24   3.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   4.2  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    23   5.5  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         23   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   7.3  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    22   9.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   9.6  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   9.6  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    22   9.6  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 69  IHTPPPSGVLTCTTINITKTW 131
           I+ PP + ++TC+T  +   W
Sbjct: 300 INNPPSNNIVTCSTDGLVHIW 320


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 63  RIIHTPPPSGVLTCTTINITKTW 131
           +++ TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  TPPPSGVLTCTTINITKT 128
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 2   INKYFXDFRXSFVXKKPINMPNYSYTP 82
           + KY+ D       K  +  P Y YTP
Sbjct: 57  VKKYYSDLSALERQKHMLENPEYKYTP 83


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 125 FCNIYCRTRKYARWWG 78
           F   YC+T K  RW G
Sbjct: 283 FTGNYCQTEKGVRWLG 298


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 128 SFCNIYCRTRKYARWWG 78
           +F N+Y  + +Y R+WG
Sbjct: 222 NFTNVYNTSCEYPRFWG 238


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 71  SYTPTIGRTYVYD 109
           SY   +GRTY++D
Sbjct: 289 SYCSNVGRTYLFD 301


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 80  PTIGRTYVYDN 112
           PTI +TYVY N
Sbjct: 562 PTITKTYVYSN 572


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 38  VXKKPINMPNYSYTPTIGRTYVYDNKYYKNL 130
           V + P+N  NY    T  R   + N  Y  L
Sbjct: 217 VSEGPLNGVNYKQNTTNNRVSSFQNSQYSTL 247


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 69  IHTPPPSGVL 98
           IH PPPSG L
Sbjct: 171 IHVPPPSGKL 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,493
Number of Sequences: 5004
Number of extensions: 6530
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)