Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc16l07
         (140 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    28   1.0  
AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    25   5.6  

>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 2   INKYFXDFRXSFVXKKPINMPNYSY-TPTIGRTYV 103
           ++ Y  D+R + + K    +P+Y Y TPT GRTY+
Sbjct: 59  LHTYDGDYRGT-ISKGDKPIPDYFYRTPTTGRTYI 92


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 2   INKYFXDFRXSFVXKKPINMPNYSY-TPTIGRTYV 103
           ++ Y  D+R + + K    +P+Y Y TPT GRTY+
Sbjct: 59  LHTYDGDYRGT-ISKGDKPIPDYFYRTPTTGRTYI 92


>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  FVXKKPINMPNYSYTPTIGRTYVYDNKYY 121
           F+  KPI+ PN+     + R YV  N+ Y
Sbjct: 179 FLAAKPISGPNFDIEAKLFRFYVVVNQQY 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,142
Number of Sequences: 27780
Number of extensions: 36819
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)